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ENCSR922WJV

ENCSR ENCODE
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eCLIP experiment on K562 against PCBP1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR322KLN

Summary

eCLIP of PCBP1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against PCBP1

Analysis

View Data Processing
Analysis page is available for ENCSR922WJV.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.0 GB
Assay: eCLIP
Target: PCBP1
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF041ETC ENCFF041ETC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 88.8 MB link
ENCFF345TZP ENCFF345TZP.bam bam (alignments); assembly: GRCh38 alignments GRCh38 96.9 MB link
ENCFF030CFW ENCFF030CFW.bam bam (alignments); assembly: hg19 alignments hg19 93.6 MB link
ENCFF175YZC ENCFF175YZC.bam bam (alignments); assembly: hg19 alignments hg19 100.8 MB link
ENCFF121XCN ENCFF121XCN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 451.1 KB link
ENCFF766DUS ENCFF766DUS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 385.3 KB link
ENCFF900IOH ENCFF900IOH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 45.3 KB link
ENCFF022GSN ENCFF022GSN.bed bed (peaks); assembly: hg19 peaks hg19 404.5 KB link
ENCFF381ZBA ENCFF381ZBA.bed bed (peaks); assembly: hg19 peaks hg19 465.8 KB link
ENCFF431FMQ ENCFF431FMQ.bed bed (peaks); assembly: hg19 peaks hg19 48.8 KB link
ENCFF002VKC ENCFF002VKC.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 753.2 KB link
ENCFF274AON ENCFF274AON.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 849.7 KB link
ENCFF600EPX ENCFF600EPX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 787.0 KB link
ENCFF869FYO ENCFF869FYO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 877.6 KB link
ENCFF202IKH ENCFF202IKH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.7 MB link
ENCFF734ILS ENCFF734ILS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.4 MB link
ENCFF552AOR ENCFF552AOR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.9 MB link
ENCFF806XPW ENCFF806XPW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.6 MB link
ENCFF363NBL ENCFF363NBL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.6 MB link
ENCFF868AMF ENCFF868AMF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.0 MB link
ENCFF205HUD ENCFF205HUD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.1 MB link
ENCFF371IVW ENCFF371IVW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.8 MB link
ENCFF010ECT ENCFF010ECT.fastq fastq (reads) reads 415.5 MB link
ENCFF466YKR ENCFF466YKR.fastq fastq (reads) reads 421.4 MB link
ENCFF754BZY ENCFF754BZY.fastq fastq (reads) reads 397.4 MB link
ENCFF795GKY ENCFF795GKY.fastq fastq (reads) reads 436.8 MB link