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ENCSR685AUR

ENCSR ENCODE
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eCLIP experiment on HepG2 against ZNF800

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR624CUX

Summary

eCLIP of ZNF800 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against ZNF800

Analysis

View Data Processing
Analysis page is available for ENCSR685AUR.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.8 GB
Assay: eCLIP
Target: ZNF800
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF265GVT ENCFF265GVT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 261.6 MB link
ENCFF474PGR ENCFF474PGR.bam bam (alignments); assembly: GRCh38 alignments GRCh38 182.4 MB link
ENCFF248VYV ENCFF248VYV.bam bam (alignments); assembly: hg19 alignments hg19 266.6 MB link
ENCFF643WBT ENCFF643WBT.bam bam (alignments); assembly: hg19 alignments hg19 185.7 MB link
ENCFF343TCO ENCFF343TCO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 67.3 KB link
ENCFF506YVW ENCFF506YVW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF712CBF ENCFF712CBF.bed bed (peaks); assembly: GRCh38 peaks GRCh38 962.5 KB link
ENCFF038BAZ ENCFF038BAZ.bed bed (peaks); assembly: hg19 peaks hg19 961.4 KB link
ENCFF660MWG ENCFF660MWG.bed bed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF793EJK ENCFF793EJK.bed bed (peaks); assembly: hg19 peaks hg19 66.1 KB link
ENCFF065FPQ ENCFF065FPQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.6 MB link
ENCFF968QPW ENCFF968QPW.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF195YQM ENCFF195YQM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF558IAO ENCFF558IAO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.6 MB link
ENCFF265GOS ENCFF265GOS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 13.1 MB link
ENCFF862VYQ ENCFF862VYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 9.8 MB link
ENCFF038GCY ENCFF038GCY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 9.9 MB link
ENCFF304CIP ENCFF304CIP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 13.3 MB link
ENCFF277XGO ENCFF277XGO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.5 MB link
ENCFF482ADJ ENCFF482ADJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 9.9 MB link
ENCFF234RUT ENCFF234RUT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.0 MB link
ENCFF629DDP ENCFF629DDP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.6 MB link
ENCFF160MKE ENCFF160MKE.fastq fastq (reads) reads 573.2 MB link
ENCFF343DKZ ENCFF343DKZ.fastq fastq (reads) reads 600.1 MB link
ENCFF348GPW ENCFF348GPW.fastq fastq (reads) reads 349.2 MB link
ENCFF959DLJ ENCFF959DLJ.fastq fastq (reads) reads 364.7 MB link