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ENCSR606BPV

ENCSR ENCODE
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eCLIP experiment on K562 against AQR

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR952RGL

Summary

eCLIP of AQR in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against AQR

Analysis

View Data Processing
Analysis page is available for ENCSR606BPV.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.5 GB
Assay: eCLIP
Target: AQR
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF374DAW ENCFF374DAW.bam bam (alignments); assembly: GRCh38 alignments GRCh38 330.3 MB link
ENCFF436KLO ENCFF436KLO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 218.1 MB link
ENCFF235BMH ENCFF235BMH.bam bam (alignments); assembly: hg19 alignments hg19 227.8 MB link
ENCFF345VSH ENCFF345VSH.bam bam (alignments); assembly: hg19 alignments hg19 353.8 MB link
ENCFF240IEE ENCFF240IEE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF620JUD ENCFF620JUD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.2 MB link
ENCFF949QGM ENCFF949QGM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 505.0 KB link
ENCFF325SFV ENCFF325SFV.bed bed (peaks); assembly: hg19 peaks hg19 2.3 MB link
ENCFF400KYS ENCFF400KYS.bed bed (peaks); assembly: hg19 peaks hg19 529.1 KB link
ENCFF465QKS ENCFF465QKS.bed bed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF206SFN ENCFF206SFN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.3 MB link
ENCFF499TGS ENCFF499TGS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.2 MB link
ENCFF166SON ENCFF166SON.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.4 MB link
ENCFF461ZQQ ENCFF461ZQQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.2 MB link
ENCFF363DGM ENCFF363DGM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 11.2 MB link
ENCFF535SIF ENCFF535SIF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 16.1 MB link
ENCFF098SCJ ENCFF098SCJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 16.9 MB link
ENCFF134ZFX ENCFF134ZFX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.7 MB link
ENCFF544NMT ENCFF544NMT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 11.8 MB link
ENCFF573NET ENCFF573NET.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 16.6 MB link
ENCFF333ERO ENCFF333ERO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 17.5 MB link
ENCFF466DMQ ENCFF466DMQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 12.1 MB link
ENCFF053NWA ENCFF053NWA.fastq fastq (reads) reads 692.7 MB link
ENCFF300ZIN ENCFF300ZIN.fastq fastq (reads) reads 451.3 MB link
ENCFF441OJX ENCFF441OJX.fastq fastq (reads) reads 730.4 MB link
ENCFF761MCX ENCFF761MCX.fastq fastq (reads) reads 425.3 MB link