← All datasets

ENCSR349CMI

ENCSR ENCODE
Export SRA CSV View on ENCODE

eCLIP experiment on K562 against WDR43

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR404ABA

Summary

eCLIP of WDR43 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against WDR43

Analysis

View Data Processing
Analysis page is available for ENCSR349CMI.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.5 GB
Assay: eCLIP
Target: WDR43
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF580XQC ENCFF580XQC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 62.1 MB link
ENCFF912BRE ENCFF912BRE.bam bam (alignments); assembly: GRCh38 alignments GRCh38 115.2 MB link
ENCFF380CNM ENCFF380CNM.bam bam (alignments); assembly: hg19 alignments hg19 63.4 MB link
ENCFF748FDO ENCFF748FDO.bam bam (alignments); assembly: hg19 alignments hg19 117.9 MB link
ENCFF213FHW ENCFF213FHW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 387.6 KB link
ENCFF244JER ENCFF244JER.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.7 KB link
ENCFF545IBP ENCFF545IBP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 608.5 KB link
ENCFF358QSY ENCFF358QSY.bed bed (peaks); assembly: hg19 peaks hg19 3.8 KB link
ENCFF425HAU ENCFF425HAU.bed bed (peaks); assembly: hg19 peaks hg19 392.5 KB link
ENCFF509FAF ENCFF509FAF.bed bed (peaks); assembly: hg19 peaks hg19 615.0 KB link
ENCFF048QZQ ENCFF048QZQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF344QPA ENCFF344QPA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 798.7 KB link
ENCFF275AYL ENCFF275AYL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF309ZSS ENCFF309ZSS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 805.7 KB link
ENCFF463JRJ ENCFF463JRJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 3.6 MB link
ENCFF998NDS ENCFF998NDS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.7 MB link
ENCFF079JRB ENCFF079JRB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.8 MB link
ENCFF177SNO ENCFF177SNO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.6 MB link
ENCFF729AVB ENCFF729AVB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 3.7 MB link
ENCFF810LWT ENCFF810LWT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.0 MB link
ENCFF238XRJ ENCFF238XRJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 3.8 MB link
ENCFF445DOZ ENCFF445DOZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.0 MB link
ENCFF083HOA ENCFF083HOA.fastq fastq (reads) reads 581.9 MB link
ENCFF188RTW ENCFF188RTW.fastq fastq (reads) reads 568.6 MB link
ENCFF522XKE ENCFF522XKE.fastq fastq (reads) reads 517.8 MB link
ENCFF899IIA ENCFF899IIA.fastq fastq (reads) reads 536.0 MB link