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ENCSR973HOJ

ENCSR ENCODE
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eCLIP experiment on HepG2 against FXR2

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR592ESN

Summary

eCLIP of FXR2 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against FXR2

Analysis

View Data Processing
Analysis page is available for ENCSR973HOJ.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.9 GB
Assay: eCLIP
Target: FXR2
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF157JBC ENCFF157JBC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 226.9 MB link
ENCFF500VOG ENCFF500VOG.bam bam (alignments); assembly: GRCh38 alignments GRCh38 180.9 MB link
ENCFF032TZM ENCFF032TZM.bam bam (alignments); assembly: hg19 alignments hg19 241.1 MB link
ENCFF385GCC ENCFF385GCC.bam bam (alignments); assembly: hg19 alignments hg19 187.9 MB link
ENCFF112MVG ENCFF112MVG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 84.1 KB link
ENCFF638WRZ ENCFF638WRZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 849.1 KB link
ENCFF702QGF ENCFF702QGF.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1022.7 KB link
ENCFF149CJJ ENCFF149CJJ.bed bed (peaks); assembly: hg19 peaks hg19 85.5 KB link
ENCFF246SBA ENCFF246SBA.bed bed (peaks); assembly: hg19 peaks hg19 863.8 KB link
ENCFF815YGA ENCFF815YGA.bed bed (peaks); assembly: hg19 peaks hg19 1.0 MB link
ENCFF445MKT ENCFF445MKT.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF483HFI ENCFF483HFI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.1 MB link
ENCFF004VKR ENCFF004VKR.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF939JDG ENCFF939JDG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.5 MB link
ENCFF528ZUW ENCFF528ZUW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 10.7 MB link
ENCFF758DRK ENCFF758DRK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 9.2 MB link
ENCFF450CWZ ENCFF450CWZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.1 MB link
ENCFF499FPK ENCFF499FPK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 9.6 MB link
ENCFF159MBO ENCFF159MBO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 10.7 MB link
ENCFF272DGX ENCFF272DGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 9.4 MB link
ENCFF410VWB ENCFF410VWB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 9.7 MB link
ENCFF934FRF ENCFF934FRF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 11.2 MB link
ENCFF034XGK ENCFF034XGK.fastq fastq (reads) reads 554.0 MB link
ENCFF074OYO ENCFF074OYO.fastq fastq (reads) reads 479.6 MB link
ENCFF300OPL ENCFF300OPL.fastq fastq (reads) reads 563.4 MB link
ENCFF733GMZ ENCFF733GMZ.fastq fastq (reads) reads 485.9 MB link