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ENCSR361OCV

ENCSR ENCODE
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eCLIP experiment on HepG2 against NIP7

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR138HJN

Summary

eCLIP of NIP7 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against NIP7

Analysis

View Data Processing
Analysis page is available for ENCSR361OCV.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.7 GB
Assay: eCLIP
Target: NIP7
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF169ABN ENCFF169ABN.bam bam (alignments); assembly: GRCh38 alignments GRCh38 49.2 MB link
ENCFF216MCK ENCFF216MCK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 43.8 MB link
ENCFF048BEP ENCFF048BEP.bam bam (alignments); assembly: hg19 alignments hg19 51.8 MB link
ENCFF251ZRM ENCFF251ZRM.bam bam (alignments); assembly: hg19 alignments hg19 45.8 MB link
ENCFF033MGP ENCFF033MGP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 7.4 KB link
ENCFF204THM ENCFF204THM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 186.3 KB link
ENCFF501GXB ENCFF501GXB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 146.7 KB link
ENCFF077RVD ENCFF077RVD.bed bed (peaks); assembly: hg19 peaks hg19 151.6 KB link
ENCFF527MFS ENCFF527MFS.bed bed (peaks); assembly: hg19 peaks hg19 191.2 KB link
ENCFF955VYD ENCFF955VYD.bed bed (peaks); assembly: hg19 peaks hg19 7.4 KB link
ENCFF060MIC ENCFF060MIC.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 489.5 KB link
ENCFF620URI ENCFF620URI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 353.9 KB link
ENCFF122OZU ENCFF122OZU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 364.1 KB link
ENCFF677VIX ENCFF677VIX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 499.9 KB link
ENCFF068VHN ENCFF068VHN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.3 MB link
ENCFF105OHO ENCFF105OHO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.1 MB link
ENCFF157MHL ENCFF157MHL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.4 MB link
ENCFF779WAQ ENCFF779WAQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.2 MB link
ENCFF318WQO ENCFF318WQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 2.4 MB link
ENCFF474VRK ENCFF474VRK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 2.2 MB link
ENCFF532HBV ENCFF532HBV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 2.4 MB link
ENCFF649OFM ENCFF649OFM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 2.2 MB link
ENCFF125GZY ENCFF125GZY.fastq fastq (reads) reads 658.7 MB link
ENCFF134AMO ENCFF134AMO.fastq fastq (reads) reads 715.0 MB link
ENCFF260EIZ ENCFF260EIZ.fastq fastq (reads) reads 587.2 MB link
ENCFF427MET ENCFF427MET.fastq fastq (reads) reads 640.9 MB link