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ENCSR464OSH

ENCSR ENCODE
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eCLIP experiment on HepG2 against FUS

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR986HXA

Summary

eCLIP of FUS in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against FUS

Analysis

View Data Processing
Analysis page is available for ENCSR464OSH.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 5.3 GB
Assay: eCLIP
Target: FUS
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF177YJA ENCFF177YJA.bam bam (alignments); assembly: GRCh38 alignments GRCh38 763.7 MB link
ENCFF181DXK ENCFF181DXK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 596.9 MB link
ENCFF014VCG ENCFF014VCG.bam bam (alignments); assembly: hg19 alignments hg19 784.7 MB link
ENCFF311LXM ENCFF311LXM.bam bam (alignments); assembly: hg19 alignments hg19 633.6 MB link
ENCFF685MZA ENCFF685MZA.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.2 MB link
ENCFF951IBI ENCFF951IBI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.5 MB link
ENCFF972DFZ ENCFF972DFZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 18.4 KB link
ENCFF106CGP ENCFF106CGP.bed bed (peaks); assembly: hg19 peaks hg19 2.2 MB link
ENCFF163PLH ENCFF163PLH.bed bed (peaks); assembly: hg19 peaks hg19 2.5 MB link
ENCFF336WDV ENCFF336WDV.bed bed (peaks); assembly: hg19 peaks hg19 16.7 KB link
ENCFF213CRG ENCFF213CRG.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.8 MB link
ENCFF734UIE ENCFF734UIE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.3 MB link
ENCFF532APU ENCFF532APU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.8 MB link
ENCFF785SER ENCFF785SER.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.4 MB link
ENCFF264FPV ENCFF264FPV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 27.2 MB link
ENCFF650QXI ENCFF650QXI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 33.8 MB link
ENCFF053HVX ENCFF053HVX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 34.9 MB link
ENCFF919FGD ENCFF919FGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 28.5 MB link
ENCFF074NHF ENCFF074NHF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 34.3 MB link
ENCFF818XWM ENCFF818XWM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 28.3 MB link
ENCFF144QMK ENCFF144QMK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 30.0 MB link
ENCFF631GSU ENCFF631GSU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 35.5 MB link
ENCFF161SRN ENCFF161SRN.fastq fastq (reads) reads 649.1 MB link
ENCFF331AAL ENCFF331AAL.fastq fastq (reads) reads 545.0 MB link
ENCFF400CXS ENCFF400CXS.fastq fastq (reads) reads 564.0 MB link
ENCFF821CAW ENCFF821CAW.fastq fastq (reads) reads 631.5 MB link