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ENCSR906ZJF

ENCSR ENCODE
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eCLIP experiment on K562 against SDAD1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR155XOS

Summary

eCLIP of SDAD1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against SDAD1

Analysis

View Data Processing
Analysis page is available for ENCSR906ZJF.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.1 GB
Assay: eCLIP
Target: SDAD1
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF113QBT ENCFF113QBT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 32.0 MB link
ENCFF946AMH ENCFF946AMH.bam bam (alignments); assembly: GRCh38 alignments GRCh38 59.4 MB link
ENCFF262TRZ ENCFF262TRZ.bam bam (alignments); assembly: hg19 alignments hg19 61.3 MB link
ENCFF998XEU ENCFF998XEU.bam bam (alignments); assembly: hg19 alignments hg19 33.4 MB link
ENCFF114EUH ENCFF114EUH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.8 KB link
ENCFF169ZAH ENCFF169ZAH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 231.7 KB link
ENCFF913FPP ENCFF913FPP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 117.1 KB link
ENCFF241KPE ENCFF241KPE.bed bed (peaks); assembly: hg19 peaks hg19 1.4 KB link
ENCFF475FOJ ENCFF475FOJ.bed bed (peaks); assembly: hg19 peaks hg19 240.0 KB link
ENCFF642DGM ENCFF642DGM.bed bed (peaks); assembly: hg19 peaks hg19 124.2 KB link
ENCFF300LDQ ENCFF300LDQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 328.5 KB link
ENCFF525ZWJ ENCFF525ZWJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 510.0 KB link
ENCFF062NZX ENCFF062NZX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 342.8 KB link
ENCFF488IGQ ENCFF488IGQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 524.7 KB link
ENCFF080UZX ENCFF080UZX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 1.7 MB link
ENCFF698ZRC ENCFF698ZRC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 3.0 MB link
ENCFF150UWL ENCFF150UWL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.1 MB link
ENCFF310NJO ENCFF310NJO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 1.8 MB link
ENCFF702ZSG ENCFF702ZSG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 3.2 MB link
ENCFF964YXC ENCFF964YXC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 1.8 MB link
ENCFF478LDY ENCFF478LDY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 3.3 MB link
ENCFF976VLP ENCFF976VLP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 1.9 MB link
ENCFF012LSN ENCFF012LSN.fastq fastq (reads) reads 450.2 MB link
ENCFF019OYM ENCFF019OYM.fastq fastq (reads) reads 506.6 MB link
ENCFF646DAJ ENCFF646DAJ.fastq fastq (reads) reads 491.4 MB link
ENCFF856AGT ENCFF856AGT.fastq fastq (reads) reads 544.0 MB link