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ENCSR181NRW

ENCSR ENCODE
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eCLIP experiment on K562 against ZC3H8

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR716DGM

Summary

eCLIP of ZC3H8 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against ZC3H8

Analysis

View Data Processing
Analysis page is available for ENCSR181NRW.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.4 GB
Assay: eCLIP
Target: ZC3H8
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF409GUM ENCFF409GUM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 45.0 MB link
ENCFF892SVF ENCFF892SVF.bam bam (alignments); assembly: GRCh38 alignments GRCh38 89.2 MB link
ENCFF302NJT ENCFF302NJT.bam bam (alignments); assembly: hg19 alignments hg19 92.5 MB link
ENCFF717DIZ ENCFF717DIZ.bam bam (alignments); assembly: hg19 alignments hg19 47.7 MB link
ENCFF382URH ENCFF382URH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 6.8 KB link
ENCFF670VYB ENCFF670VYB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 323.3 KB link
ENCFF725VLW ENCFF725VLW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 476.9 KB link
ENCFF207UUG ENCFF207UUG.bed bed (peaks); assembly: hg19 peaks hg19 6.8 KB link
ENCFF515ATI ENCFF515ATI.bed bed (peaks); assembly: hg19 peaks hg19 339.1 KB link
ENCFF990BSZ ENCFF990BSZ.bed bed (peaks); assembly: hg19 peaks hg19 495.2 KB link
ENCFF397QWI ENCFF397QWI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 767.2 KB link
ENCFF810NKS ENCFF810NKS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 578.3 KB link
ENCFF435DGO ENCFF435DGO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 597.1 KB link
ENCFF966TMA ENCFF966TMA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 788.1 KB link
ENCFF343YDJ ENCFF343YDJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.6 MB link
ENCFF607HRG ENCFF607HRG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.3 MB link
ENCFF011ICS ENCFF011ICS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.4 MB link
ENCFF706LXQ ENCFF706LXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.7 MB link
ENCFF627NRS ENCFF627NRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 2.7 MB link
ENCFF711ATW ENCFF711ATW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.5 MB link
ENCFF276YFH ENCFF276YFH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.6 MB link
ENCFF637KIG ENCFF637KIG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 2.9 MB link
ENCFF172VCZ ENCFF172VCZ.fastq fastq (reads) reads 674.7 MB link
ENCFF222OHT ENCFF222OHT.fastq fastq (reads) reads 432.8 MB link
ENCFF361EVD ENCFF361EVD.fastq fastq (reads) reads 614.6 MB link
ENCFF411LMS ENCFF411LMS.fastq fastq (reads) reads 392.0 MB link