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ENCSR046JHH

ENCSR ENCODE
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eCLIP experiment on K562 against CPEB4

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR533BNK

Summary

eCLIP of CPEB4 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against CPEB4

Analysis

View Data Processing
Analysis page is available for ENCSR046JHH.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.0 GB
Assay: eCLIP
Target: CPEB4
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF038VZO ENCFF038VZO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 74.5 MB link
ENCFF216ENA ENCFF216ENA.bam bam (alignments); assembly: GRCh38 alignments GRCh38 86.3 MB link
ENCFF161SFX ENCFF161SFX.bam bam (alignments); assembly: hg19 alignments hg19 77.6 MB link
ENCFF165CFI ENCFF165CFI.bam bam (alignments); assembly: hg19 alignments hg19 92.2 MB link
ENCFF370BLG ENCFF370BLG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 476.2 KB link
ENCFF665BGJ ENCFF665BGJ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 4.7 KB link
ENCFF976VFC ENCFF976VFC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 405.5 KB link
ENCFF104VMP ENCFF104VMP.bed bed (peaks); assembly: hg19 peaks hg19 491.9 KB link
ENCFF153CMF ENCFF153CMF.bed bed (peaks); assembly: hg19 peaks hg19 5.2 KB link
ENCFF379DBY ENCFF379DBY.bed bed (peaks); assembly: hg19 peaks hg19 430.2 KB link
ENCFF462NKY ENCFF462NKY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 798.1 KB link
ENCFF903OOM ENCFF903OOM.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 843.2 KB link
ENCFF180DLO ENCFF180DLO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 888.3 KB link
ENCFF998YKL ENCFF998YKL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 819.2 KB link
ENCFF508FXQ ENCFF508FXQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.2 MB link
ENCFF718OFC ENCFF718OFC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 3.8 MB link
ENCFF655ROH ENCFF655ROH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.4 MB link
ENCFF874CIU ENCFF874CIU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.9 MB link
ENCFF231USX ENCFF231USX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.4 MB link
ENCFF402FOP ENCFF402FOP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.0 MB link
ENCFF075LPL ENCFF075LPL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.1 MB link
ENCFF684MMZ ENCFF684MMZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.6 MB link
ENCFF423MRZ ENCFF423MRZ.fastq fastq (reads) reads 361.7 MB link
ENCFF445MTV ENCFF445MTV.fastq fastq (reads) reads 312.2 MB link
ENCFF764VBB ENCFF764VBB.fastq fastq (reads) reads 472.7 MB link
ENCFF854FIH ENCFF854FIH.fastq fastq (reads) reads 557.6 MB link