← All datasets

ENCSR177QQY

ENCSR ENCODE
Export SRA CSV View on ENCODE

eCLIP experiment on K562 against AKAP1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR544UON

Summary

eCLIP of AKAP1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against AKAP1

Analysis

View Data Processing
Analysis page is available for ENCSR177QQY.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.4 GB
Assay: eCLIP
Target: AKAP1
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF016YOC ENCFF016YOC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 94.4 MB link
ENCFF710RUU ENCFF710RUU.bam bam (alignments); assembly: GRCh38 alignments GRCh38 198.5 MB link
ENCFF581UEA ENCFF581UEA.bam bam (alignments); assembly: hg19 alignments hg19 101.1 MB link
ENCFF981APU ENCFF981APU.bam bam (alignments); assembly: hg19 alignments hg19 207.3 MB link
ENCFF010IOJ ENCFF010IOJ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 766.9 KB link
ENCFF033EFV ENCFF033EFV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 33.8 KB link
ENCFF443ABK ENCFF443ABK.bed bed (peaks); assembly: GRCh38 peaks GRCh38 377.6 KB link
ENCFF151ZTH ENCFF151ZTH.bed bed (peaks); assembly: hg19 peaks hg19 32.8 KB link
ENCFF701BNI ENCFF701BNI.bed bed (peaks); assembly: hg19 peaks hg19 393.3 KB link
ENCFF972INE ENCFF972INE.bed bed (peaks); assembly: hg19 peaks hg19 780.9 KB link
ENCFF391XZA ENCFF391XZA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 763.1 KB link
ENCFF540EIN ENCFF540EIN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.3 MB link
ENCFF321XTY ENCFF321XTY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF678VMJ ENCFF678VMJ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 788.4 KB link
ENCFF625XVL ENCFF625XVL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.3 MB link
ENCFF820DWM ENCFF820DWM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 10.6 MB link
ENCFF051CYD ENCFF051CYD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.0 MB link
ENCFF111NHE ENCFF111NHE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.5 MB link
ENCFF294XKC ENCFF294XKC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.5 MB link
ENCFF719MCG ENCFF719MCG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 11.2 MB link
ENCFF519UHQ ENCFF519UHQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.7 MB link
ENCFF928HUA ENCFF928HUA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 11.6 MB link
ENCFF013IBR ENCFF013IBR.fastq fastq (reads) reads 387.8 MB link
ENCFF187YLY ENCFF187YLY.fastq fastq (reads) reads 566.1 MB link
ENCFF413SVN ENCFF413SVN.fastq fastq (reads) reads 486.9 MB link
ENCFF916SOX ENCFF916SOX.fastq fastq (reads) reads 334.5 MB link