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ENCSR023PKW

ENCSR ENCODE
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eCLIP experiment on K562 against EIF3G

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR761AJD

Summary

eCLIP of EIF3G in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against EIF3G

Analysis

View Data Processing
Analysis page is available for ENCSR023PKW.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 1.9 GB
Assay: eCLIP
Target: EIF3G
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF605PZM ENCFF605PZM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 175.8 MB link
ENCFF724QGF ENCFF724QGF.bam bam (alignments); assembly: GRCh38 alignments GRCh38 51.2 MB link
ENCFF083KKV ENCFF083KKV.bam bam (alignments); assembly: hg19 alignments hg19 183.9 MB link
ENCFF613CYM ENCFF613CYM.bam bam (alignments); assembly: hg19 alignments hg19 55.3 MB link
ENCFF369RBP ENCFF369RBP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 256.8 KB link
ENCFF388GZP ENCFF388GZP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 566.8 KB link
ENCFF634UAC ENCFF634UAC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 7.3 KB link
ENCFF258VPL ENCFF258VPL.bed bed (peaks); assembly: hg19 peaks hg19 520.5 KB link
ENCFF362BDI ENCFF362BDI.bed bed (peaks); assembly: hg19 peaks hg19 279.4 KB link
ENCFF534ONM ENCFF534ONM.bed bed (peaks); assembly: hg19 peaks hg19 7.4 KB link
ENCFF523PRE ENCFF523PRE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF827LVH ENCFF827LVH.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 499.1 KB link
ENCFF570LAY ENCFF570LAY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 528.2 KB link
ENCFF743RET ENCFF743RET.bigBed bigBed (peaks); assembly: hg19 peaks hg19 815.0 KB link
ENCFF732EGK ENCFF732EGK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.8 MB link
ENCFF897PMP ENCFF897PMP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 9.5 MB link
ENCFF031UFI ENCFF031UFI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 9.8 MB link
ENCFF639CRA ENCFF639CRA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.0 MB link
ENCFF692DXH ENCFF692DXH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 3.0 MB link
ENCFF813DFW ENCFF813DFW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 9.9 MB link
ENCFF259ZQR ENCFF259ZQR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.3 MB link
ENCFF958RJQ ENCFF958RJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 3.1 MB link
ENCFF364MMW ENCFF364MMW.fastq fastq (reads) reads 502.7 MB link
ENCFF548DYX ENCFF548DYX.fastq fastq (reads) reads 211.7 MB link
ENCFF627GSD ENCFF627GSD.fastq fastq (reads) reads 484.1 MB link
ENCFF908IVH ENCFF908IVH.fastq fastq (reads) reads 219.0 MB link