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ENCSR249ROI

ENCSR ENCODE
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eCLIP experiment on K562 against HNRNPC

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR960OKV

Summary

eCLIP of HNRNPC in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against HNRNPC

Analysis

View Data Processing
Analysis page is available for ENCSR249ROI.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 10.3 GB
Assay: eCLIP
Target: HNRNPC
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF048BIQ ENCFF048BIQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 593.7 MB link
ENCFF935AZO ENCFF935AZO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 1.8 GB link
ENCFF381SDJ ENCFF381SDJ.bam bam (alignments); assembly: hg19 alignments hg19 1.9 GB link
ENCFF669YBJ ENCFF669YBJ.bam bam (alignments); assembly: hg19 alignments hg19 636.6 MB link
ENCFF167CDB ENCFF167CDB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 12.5 KB link
ENCFF526OQL ENCFF526OQL.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF664RLU ENCFF664RLU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF062LWZ ENCFF062LWZ.bed bed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF159HMF ENCFF159HMF.bed bed (peaks); assembly: hg19 peaks hg19 13.4 KB link
ENCFF971ZDB ENCFF971ZDB.bed bed (peaks); assembly: hg19 peaks hg19 1.9 MB link
ENCFF810SWJ ENCFF810SWJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.3 MB link
ENCFF961KTO ENCFF961KTO.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.3 MB link
ENCFF202EXL ENCFF202EXL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.5 MB link
ENCFF778YMU ENCFF778YMU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.5 MB link
ENCFF749IQI ENCFF749IQI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 91.7 MB link
ENCFF865EZO ENCFF865EZO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 26.6 MB link
ENCFF187OQS ENCFF187OQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 28.4 MB link
ENCFF330MMF ENCFF330MMF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 96.9 MB link
ENCFF214HGS ENCFF214HGS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 73.4 MB link
ENCFF896JOI ENCFF896JOI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 27.6 MB link
ENCFF147RRK ENCFF147RRK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 100.7 MB link
ENCFF334ACF ENCFF334ACF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 29.4 MB link
ENCFF149LRA ENCFF149LRA.fastq fastq (reads) reads 586.4 MB link
ENCFF669MUY ENCFF669MUY.fastq fastq (reads) reads 2.1 GB link
ENCFF734JPC ENCFF734JPC.fastq fastq (reads) reads 513.9 MB link
ENCFF937KFG ENCFF937KFG.fastq fastq (reads) reads 1.8 GB link