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ENCSR979EWD

ENCSR ENCODE
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eCLIP experiment on HepG2 against STAU2

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR701QEP

Summary

eCLIP of STAU2 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against STAU2

Analysis

View Data Processing
Analysis page is available for ENCSR979EWD.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 4.9 GB
Assay: eCLIP
Target: STAU2
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF202ITE ENCFF202ITE.bam bam (alignments); assembly: GRCh38 alignments GRCh38 616.5 MB link
ENCFF559ATC ENCFF559ATC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 913.6 MB link
ENCFF709VHF ENCFF709VHF.bam bam (alignments); assembly: hg19 alignments hg19 945.8 MB link
ENCFF884DMT ENCFF884DMT.bam bam (alignments); assembly: hg19 alignments hg19 641.5 MB link
ENCFF446NFS ENCFF446NFS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.4 MB link
ENCFF678FCX ENCFF678FCX.bed bed (peaks); assembly: GRCh38 peaks GRCh38 18.5 KB link
ENCFF992ALD ENCFF992ALD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.8 MB link
ENCFF788LMZ ENCFF788LMZ.bed bed (peaks); assembly: hg19 peaks hg19 17.2 KB link
ENCFF792GQD ENCFF792GQD.bed bed (peaks); assembly: hg19 peaks hg19 2.5 MB link
ENCFF879BYO ENCFF879BYO.bed bed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF061SBF ENCFF061SBF.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.2 MB link
ENCFF648BIE ENCFF648BIE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.7 MB link
ENCFF382AIQ ENCFF382AIQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.8 MB link
ENCFF694MAN ENCFF694MAN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.2 MB link
ENCFF314FTK ENCFF314FTK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 27.8 MB link
ENCFF591CBW ENCFF591CBW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 39.4 MB link
ENCFF022VMG ENCFF022VMG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 40.4 MB link
ENCFF357LSF ENCFF357LSF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 28.6 MB link
ENCFF197UHX ENCFF197UHX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 29.1 MB link
ENCFF734LHC ENCFF734LHC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 40.6 MB link
ENCFF169YHS ENCFF169YHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 30.0 MB link
ENCFF425OKT ENCFF425OKT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 41.7 MB link
ENCFF048PWH ENCFF048PWH.fastq fastq (reads) reads 479.5 MB link
ENCFF366NPD ENCFF366NPD.fastq fastq (reads) reads 380.8 MB link
ENCFF659GPS ENCFF659GPS.fastq fastq (reads) reads 306.2 MB link
ENCFF920RKR ENCFF920RKR.fastq fastq (reads) reads 387.4 MB link