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ENCSR970FEW

ENCSR ENCODE
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eCLIP experiment on HepG2 against DDX52

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR991LWQ

Summary

eCLIP of DDX52 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against DDX52

Analysis

View Data Processing
Analysis page is available for ENCSR970FEW.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 4.1 GB
Assay: eCLIP
Target: DDX52
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF340WIB ENCFF340WIB.bam bam (alignments); assembly: GRCh38 alignments GRCh38 334.9 MB link
ENCFF618EON ENCFF618EON.bam bam (alignments); assembly: GRCh38 alignments GRCh38 358.4 MB link
ENCFF356MCF ENCFF356MCF.bam bam (alignments); assembly: hg19 alignments hg19 375.0 MB link
ENCFF879GTY ENCFF879GTY.bam bam (alignments); assembly: hg19 alignments hg19 347.0 MB link
ENCFF005GER ENCFF005GER.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.7 KB link
ENCFF013SWN ENCFF013SWN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF563XEI ENCFF563XEI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF257KKQ ENCFF257KKQ.bed bed (peaks); assembly: hg19 peaks hg19 3.5 KB link
ENCFF539JUN ENCFF539JUN.bed bed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF591WOA ENCFF591WOA.bed bed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF360FIN ENCFF360FIN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.7 MB link
ENCFF684ITO ENCFF684ITO.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.7 MB link
ENCFF037HRM ENCFF037HRM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.7 MB link
ENCFF162FCY ENCFF162FCY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.7 MB link
ENCFF288FUX ENCFF288FUX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 19.6 MB link
ENCFF480SDO ENCFF480SDO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 18.0 MB link
ENCFF299YXS ENCFF299YXS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 20.1 MB link
ENCFF504QEC ENCFF504QEC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 18.4 MB link
ENCFF408KBS ENCFF408KBS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 18.4 MB link
ENCFF599ZVK ENCFF599ZVK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 19.9 MB link
ENCFF945OFF ENCFF945OFF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 18.9 MB link
ENCFF953HPK ENCFF953HPK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 20.5 MB link
ENCFF479WLK ENCFF479WLK.fastq fastq (reads) reads 647.2 MB link
ENCFF522NFJ ENCFF522NFJ.fastq fastq (reads) reads 657.3 MB link
ENCFF560TLH ENCFF560TLH.fastq fastq (reads) reads 667.6 MB link
ENCFF939HML ENCFF939HML.fastq fastq (reads) reads 643.5 MB link