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ENCSR964VOX

ENCSR ENCODE
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eCLIP experiment on K562 against UTP18

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR255PGS

Summary

eCLIP of UTP18 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against UTP18

Analysis

View Data Processing
Analysis page is available for ENCSR964VOX.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.9 GB
Assay: eCLIP
Target: UTP18
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF046FNK ENCFF046FNK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 83.5 MB link
ENCFF211AAW ENCFF211AAW.bam bam (alignments); assembly: GRCh38 alignments GRCh38 73.7 MB link
ENCFF724EMZ ENCFF724EMZ.bam bam (alignments); assembly: hg19 alignments hg19 77.8 MB link
ENCFF946YXD ENCFF946YXD.bam bam (alignments); assembly: hg19 alignments hg19 86.4 MB link
ENCFF026UJY ENCFF026UJY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 362.9 KB link
ENCFF353ULN ENCFF353ULN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 292.7 KB link
ENCFF783INO ENCFF783INO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.6 KB link
ENCFF014AWF ENCFF014AWF.bed bed (peaks); assembly: hg19 peaks hg19 374.5 KB link
ENCFF379LHC ENCFF379LHC.bed bed (peaks); assembly: hg19 peaks hg19 307.4 KB link
ENCFF456SOS ENCFF456SOS.bed bed (peaks); assembly: hg19 peaks hg19 3.7 KB link
ENCFF625BWN ENCFF625BWN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 742.8 KB link
ENCFF757VLY ENCFF757VLY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 634.8 KB link
ENCFF049JUK ENCFF049JUK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 760.3 KB link
ENCFF421EUK ENCFF421EUK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 661.6 KB link
ENCFF148JQN ENCFF148JQN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.1 MB link
ENCFF694SHS ENCFF694SHS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 3.7 MB link
ENCFF368MWK ENCFF368MWK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.8 MB link
ENCFF946PZY ENCFF946PZY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.2 MB link
ENCFF003MPD ENCFF003MPD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 3.8 MB link
ENCFF252UGK ENCFF252UGK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.3 MB link
ENCFF033CAR ENCFF033CAR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.0 MB link
ENCFF100KST ENCFF100KST.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 4.4 MB link
ENCFF038OVY ENCFF038OVY.fastq fastq (reads) reads 686.0 MB link
ENCFF386YUM ENCFF386YUM.fastq fastq (reads) reads 613.4 MB link
ENCFF656OVN ENCFF656OVN.fastq fastq (reads) reads 643.2 MB link
ENCFF795DXS ENCFF795DXS.fastq fastq (reads) reads 714.6 MB link