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ENCSR337XGI

ENCSR ENCODE
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eCLIP experiment on HepG2 against SAFB

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR451BRX

Summary

eCLIP of SAFB in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against SAFB

Analysis

View Data Processing
Analysis page is available for ENCSR337XGI.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 6.3 GB
Assay: eCLIP
Target: SAFB
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF112CRX ENCFF112CRX.bam bam (alignments); assembly: GRCh38 alignments GRCh38 904.7 MB link
ENCFF535RVD ENCFF535RVD.bam bam (alignments); assembly: GRCh38 alignments GRCh38 816.3 MB link
ENCFF255QDJ ENCFF255QDJ.bam bam (alignments); assembly: hg19 alignments hg19 821.4 MB link
ENCFF669OQB ENCFF669OQB.bam bam (alignments); assembly: hg19 alignments hg19 914.5 MB link
ENCFF056OAB ENCFF056OAB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.5 MB link
ENCFF232WUE ENCFF232WUE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 6.6 KB link
ENCFF399MVB ENCFF399MVB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.4 MB link
ENCFF035IYP ENCFF035IYP.bed bed (peaks); assembly: hg19 peaks hg19 2.4 MB link
ENCFF469SRC ENCFF469SRC.bed bed (peaks); assembly: hg19 peaks hg19 5.7 KB link
ENCFF932VUF ENCFF932VUF.bed bed (peaks); assembly: hg19 peaks hg19 2.6 MB link
ENCFF029LOP ENCFF029LOP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.6 MB link
ENCFF615AJW ENCFF615AJW.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.8 MB link
ENCFF024XIO ENCFF024XIO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.9 MB link
ENCFF432SVT ENCFF432SVT.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.6 MB link
ENCFF667EYO ENCFF667EYO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 35.4 MB link
ENCFF896KRQ ENCFF896KRQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 38.8 MB link
ENCFF419KEL ENCFF419KEL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 39.6 MB link
ENCFF489WXE ENCFF489WXE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 35.9 MB link
ENCFF112GIE ENCFF112GIE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 39.2 MB link
ENCFF543ZXM ENCFF543ZXM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 35.9 MB link
ENCFF526JFL ENCFF526JFL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 36.3 MB link
ENCFF971JOK ENCFF971JOK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 39.9 MB link
ENCFF040MFF ENCFF040MFF.fastq fastq (reads) reads 691.9 MB link
ENCFF134UTH ENCFF134UTH.fastq fastq (reads) reads 620.2 MB link
ENCFF272SVX ENCFF272SVX.fastq fastq (reads) reads 618.3 MB link
ENCFF707BBC ENCFF707BBC.fastq fastq (reads) reads 694.7 MB link