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ENCSR085JPB

ENCSR ENCODE
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eCLIP experiment on HepG2 against WDR43

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR722KGI

Summary

eCLIP of WDR43 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against WDR43

Analysis

View Data Processing
Analysis page is available for ENCSR085JPB.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.6 GB
Assay: eCLIP
Target: WDR43
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF060BRD ENCFF060BRD.bam bam (alignments); assembly: GRCh38 alignments GRCh38 133.1 MB link
ENCFF847AOM ENCFF847AOM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 135.1 MB link
ENCFF569JWF ENCFF569JWF.bam bam (alignments); assembly: hg19 alignments hg19 139.6 MB link
ENCFF938XEE ENCFF938XEE.bam bam (alignments); assembly: hg19 alignments hg19 139.8 MB link
ENCFF014YMA ENCFF014YMA.bed bed (peaks); assembly: GRCh38 peaks GRCh38 602.0 KB link
ENCFF945NFS ENCFF945NFS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 4.7 KB link
ENCFF966QXZ ENCFF966QXZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 628.0 KB link
ENCFF431WWR ENCFF431WWR.bed bed (peaks); assembly: hg19 peaks hg19 4.6 KB link
ENCFF784AMG ENCFF784AMG.bed bed (peaks); assembly: hg19 peaks hg19 643.5 KB link
ENCFF868YSF ENCFF868YSF.bed bed (peaks); assembly: hg19 peaks hg19 621.0 KB link
ENCFF039OIV ENCFF039OIV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF177OFX ENCFF177OFX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF069PAM ENCFF069PAM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF977RCC ENCFF977RCC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF525GUS ENCFF525GUS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.4 MB link
ENCFF884EHK ENCFF884EHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.3 MB link
ENCFF126WLG ENCFF126WLG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.5 MB link
ENCFF416VBG ENCFF416VBG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.5 MB link
ENCFF025FEX ENCFF025FEX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.5 MB link
ENCFF362ZCB ENCFF362ZCB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.4 MB link
ENCFF034IPX ENCFF034IPX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.6 MB link
ENCFF944ZRE ENCFF944ZRE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.7 MB link
ENCFF133XVB ENCFF133XVB.fastq fastq (reads) reads 532.8 MB link
ENCFF291FNE ENCFF291FNE.fastq fastq (reads) reads 524.9 MB link
ENCFF503AHN ENCFF503AHN.fastq fastq (reads) reads 485.6 MB link
ENCFF577MTW ENCFF577MTW.fastq fastq (reads) reads 481.7 MB link