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ENCSR999YGP

ENCSR ENCODE
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eCLIP experiment on K562 against GRWD1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR251FMT

Summary

eCLIP of GRWD1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against GRWD1

Analysis

View Data Processing
Analysis page is available for ENCSR999YGP.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.6 GB
Assay: eCLIP
Target: GRWD1
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF217MRO ENCFF217MRO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 504.4 MB link
ENCFF330PVJ ENCFF330PVJ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 320.5 MB link
ENCFF491DNL ENCFF491DNL.bam bam (alignments); assembly: hg19 alignments hg19 525.2 MB link
ENCFF885NJW ENCFF885NJW.bam bam (alignments); assembly: hg19 alignments hg19 327.9 MB link
ENCFF250PFH ENCFF250PFH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF282VMI ENCFF282VMI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.9 MB link
ENCFF327DLL ENCFF327DLL.bed bed (peaks); assembly: GRCh38 peaks GRCh38 98.3 KB link
ENCFF146YIO ENCFF146YIO.bed bed (peaks); assembly: hg19 peaks hg19 96.6 KB link
ENCFF607PIM ENCFF607PIM.bed bed (peaks); assembly: hg19 peaks hg19 1.5 MB link
ENCFF757KMM ENCFF757KMM.bed bed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF315NPJ ENCFF315NPJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.6 MB link
ENCFF598OCW ENCFF598OCW.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.0 MB link
ENCFF080NUM ENCFF080NUM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.0 MB link
ENCFF863GEM ENCFF863GEM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.6 MB link
ENCFF051YGO ENCFF051YGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 16.4 MB link
ENCFF479IAR ENCFF479IAR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 22.4 MB link
ENCFF022OZR ENCFF022OZR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 23.0 MB link
ENCFF752TOA ENCFF752TOA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 16.7 MB link
ENCFF128BVH ENCFF128BVH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 23.1 MB link
ENCFF499RMW ENCFF499RMW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 17.0 MB link
ENCFF135LNE ENCFF135LNE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 23.8 MB link
ENCFF895OFS ENCFF895OFS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 17.2 MB link
ENCFF248ZFV ENCFF248ZFV.fastq fastq (reads) reads 327.0 MB link
ENCFF569HJH ENCFF569HJH.fastq fastq (reads) reads 350.0 MB link
ENCFF727IRZ ENCFF727IRZ.fastq fastq (reads) reads 609.2 MB link
ENCFF939DRW ENCFF939DRW.fastq fastq (reads) reads 557.6 MB link