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ENCSR356ZMO

ENCSR ENCODE
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eCLIP experiment on HepG2 against AKAP1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR902XTJ

Summary

eCLIP of AKAP1 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against AKAP1

Analysis

View Data Processing
Analysis page is available for ENCSR356ZMO.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.9 GB
Assay: eCLIP
Target: AKAP1
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF127MXD ENCFF127MXD.bam bam (alignments); assembly: GRCh38 alignments GRCh38 284.1 MB link
ENCFF780HTF ENCFF780HTF.bam bam (alignments); assembly: GRCh38 alignments GRCh38 265.9 MB link
ENCFF430MTS ENCFF430MTS.bam bam (alignments); assembly: hg19 alignments hg19 300.5 MB link
ENCFF847SYN ENCFF847SYN.bam bam (alignments); assembly: hg19 alignments hg19 277.7 MB link
ENCFF233BIC ENCFF233BIC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 944.8 KB link
ENCFF739ERP ENCFF739ERP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 840.7 KB link
ENCFF749IUB ENCFF749IUB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 137.7 KB link
ENCFF271UXH ENCFF271UXH.bed bed (peaks); assembly: hg19 peaks hg19 980.8 KB link
ENCFF575BCP ENCFF575BCP.bed bed (peaks); assembly: hg19 peaks hg19 136.1 KB link
ENCFF807KPM ENCFF807KPM.bed bed (peaks); assembly: hg19 peaks hg19 862.0 KB link
ENCFF122EAJ ENCFF122EAJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.7 MB link
ENCFF416NDI ENCFF416NDI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.9 MB link
ENCFF509CIP ENCFF509CIP.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF523YBN ENCFF523YBN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF382JHI ENCFF382JHI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 12.4 MB link
ENCFF882JAU ENCFF882JAU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 14.1 MB link
ENCFF351AQY ENCFF351AQY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 12.9 MB link
ENCFF473TXX ENCFF473TXX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 14.8 MB link
ENCFF210MSW ENCFF210MSW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.0 MB link
ENCFF810DIK ENCFF810DIK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 14.6 MB link
ENCFF413QOV ENCFF413QOV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 15.2 MB link
ENCFF776AQI ENCFF776AQI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.5 MB link
ENCFF075DAU ENCFF075DAU.fastq fastq (reads) reads 472.4 MB link
ENCFF672HYO ENCFF672HYO.fastq fastq (reads) reads 419.0 MB link
ENCFF852ECZ ENCFF852ECZ.fastq fastq (reads) reads 399.9 MB link
ENCFF990EAG ENCFF990EAG.fastq fastq (reads) reads 448.0 MB link