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ENCSR202HKN

ENCSR ENCODE
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eCLIP experiment on K562 against WDR3

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR033FWT

Summary

eCLIP of WDR3 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against WDR3

Analysis

View Data Processing
Analysis page is available for ENCSR202HKN.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.3 GB
Assay: eCLIP
Target: WDR3
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF372YUO ENCFF372YUO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 55.1 MB link
ENCFF416OND ENCFF416OND.bam bam (alignments); assembly: GRCh38 alignments GRCh38 65.9 MB link
ENCFF444UFA ENCFF444UFA.bam bam (alignments); assembly: hg19 alignments hg19 57.2 MB link
ENCFF731PVT ENCFF731PVT.bam bam (alignments); assembly: hg19 alignments hg19 70.2 MB link
ENCFF093FTO ENCFF093FTO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 368.6 KB link
ENCFF110QAU ENCFF110QAU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 153.4 KB link
ENCFF560RWD ENCFF560RWD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 838.0 B link
ENCFF215XPR ENCFF215XPR.bed bed (peaks); assembly: hg19 peaks hg19 911.0 B link
ENCFF380SYQ ENCFF380SYQ.bed bed (peaks); assembly: hg19 peaks hg19 160.4 KB link
ENCFF991NPH ENCFF991NPH.bed bed (peaks); assembly: hg19 peaks hg19 391.6 KB link
ENCFF787GQZ ENCFF787GQZ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 656.9 KB link
ENCFF824USQ ENCFF824USQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 352.9 KB link
ENCFF308MZK ENCFF308MZK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 362.3 KB link
ENCFF469DUE ENCFF469DUE.bigBed bigBed (peaks); assembly: hg19 peaks hg19 686.1 KB link
ENCFF474ULB ENCFF474ULB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.7 MB link
ENCFF507SLL ENCFF507SLL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 3.3 MB link
ENCFF053JDY ENCFF053JDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.8 MB link
ENCFF096AQT ENCFF096AQT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 3.4 MB link
ENCFF426QHQ ENCFF426QHQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 2.9 MB link
ENCFF636LWR ENCFF636LWR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 3.4 MB link
ENCFF593DHS ENCFF593DHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 3.6 MB link
ENCFF765GUO ENCFF765GUO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 3.0 MB link
ENCFF270QTE ENCFF270QTE.fastq fastq (reads) reads 647.0 MB link
ENCFF733LSZ ENCFF733LSZ.fastq fastq (reads) reads 513.3 MB link
ENCFF915BUQ ENCFF915BUQ.fastq fastq (reads) reads 537.0 MB link
ENCFF953XOY ENCFF953XOY.fastq fastq (reads) reads 421.4 MB link