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ENCSR891RIC

ENCSR ENCODE
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eCLIP experiment on K562 against NIPBL

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR816NVJ

Summary

eCLIP of NIPBL in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against NIPBL

Analysis

View Data Processing
Analysis page is available for ENCSR891RIC.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.6 GB
Assay: eCLIP
Target: NIPBL
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF400EPM ENCFF400EPM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 134.8 MB link
ENCFF532OLG ENCFF532OLG.bam bam (alignments); assembly: GRCh38 alignments GRCh38 241.3 MB link
ENCFF472YSO ENCFF472YSO.bam bam (alignments); assembly: hg19 alignments hg19 250.5 MB link
ENCFF861ARK ENCFF861ARK.bam bam (alignments); assembly: hg19 alignments hg19 137.8 MB link
ENCFF097GJE ENCFF097GJE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 851.3 KB link
ENCFF554NIV ENCFF554NIV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 8.3 KB link
ENCFF563ZUY ENCFF563ZUY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF092XHF ENCFF092XHF.bed bed (peaks); assembly: hg19 peaks hg19 8.6 KB link
ENCFF484RAM ENCFF484RAM.bed bed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF525NXB ENCFF525NXB.bed bed (peaks); assembly: hg19 peaks hg19 862.3 KB link
ENCFF090TCL ENCFF090TCL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.5 MB link
ENCFF983YQJ ENCFF983YQJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF021HWA ENCFF021HWA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF239HHG ENCFF239HHG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.7 MB link
ENCFF195SFG ENCFF195SFG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.3 MB link
ENCFF226EJN ENCFF226EJN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 12.9 MB link
ENCFF283JMP ENCFF283JMP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.5 MB link
ENCFF973PQI ENCFF973PQI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 13.4 MB link
ENCFF249KWW ENCFF249KWW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.3 MB link
ENCFF461YQO ENCFF461YQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.6 MB link
ENCFF581SNU ENCFF581SNU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.7 MB link
ENCFF991MMA ENCFF991MMA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.8 MB link
ENCFF022RTU ENCFF022RTU.fastq fastq (reads) reads 835.5 MB link
ENCFF325XUV ENCFF325XUV.fastq fastq (reads) reads 625.6 MB link
ENCFF658FIC ENCFF658FIC.fastq fastq (reads) reads 613.7 MB link
ENCFF742IAV ENCFF742IAV.fastq fastq (reads) reads 804.2 MB link