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ENCSR488JKQ

ENCSR ENCODE
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eCLIP experiment on HepG2 against UTP18

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR387OVO

Summary

eCLIP of UTP18 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against UTP18

Analysis

View Data Processing
Analysis page is available for ENCSR488JKQ.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.9 GB
Assay: eCLIP
Target: UTP18
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF511WWE ENCFF511WWE.bam bam (alignments); assembly: GRCh38 alignments GRCh38 112.9 MB link
ENCFF978BQG ENCFF978BQG.bam bam (alignments); assembly: GRCh38 alignments GRCh38 123.2 MB link
ENCFF220TVR ENCFF220TVR.bam bam (alignments); assembly: hg19 alignments hg19 128.9 MB link
ENCFF747AWV ENCFF747AWV.bam bam (alignments); assembly: hg19 alignments hg19 116.7 MB link
ENCFF146BNV ENCFF146BNV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 479.6 KB link
ENCFF644EIR ENCFF644EIR.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.3 KB link
ENCFF840HCE ENCFF840HCE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 511.2 KB link
ENCFF227SZN ENCFF227SZN.bed bed (peaks); assembly: hg19 peaks hg19 522.2 KB link
ENCFF235ASG ENCFF235ASG.bed bed (peaks); assembly: hg19 peaks hg19 494.2 KB link
ENCFF926QBW ENCFF926QBW.bed bed (peaks); assembly: hg19 peaks hg19 1.3 KB link
ENCFF422COM ENCFF422COM.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 924.5 KB link
ENCFF753YJQ ENCFF753YJQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 963.5 KB link
ENCFF002NJF ENCFF002NJF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 954.4 KB link
ENCFF512QJQ ENCFF512QJQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 987.7 KB link
ENCFF399VCU ENCFF399VCU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.0 MB link
ENCFF701IJS ENCFF701IJS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.2 MB link
ENCFF040VQS ENCFF040VQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.4 MB link
ENCFF301DXX ENCFF301DXX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.1 MB link
ENCFF176YUS ENCFF176YUS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.5 MB link
ENCFF660POU ENCFF660POU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.2 MB link
ENCFF196OAM ENCFF196OAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.7 MB link
ENCFF569STQ ENCFF569STQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.3 MB link
ENCFF019ITV ENCFF019ITV.fastq fastq (reads) reads 649.0 MB link
ENCFF117YFR ENCFF117YFR.fastq fastq (reads) reads 606.2 MB link
ENCFF466WOW ENCFF466WOW.fastq fastq (reads) reads 606.7 MB link
ENCFF555EML ENCFF555EML.fastq fastq (reads) reads 566.2 MB link