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ENCSR580OFI

ENCSR ENCODE
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eCLIP experiment on K562 against SUPV3L1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR328KKB

Summary

eCLIP of SUPV3L1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against SUPV3L1

Analysis

View Data Processing
Analysis page is available for ENCSR580OFI.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 431.7 MB
Assay: eCLIP
Target: SUPV3L1
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF496FIX ENCFF496FIX.bam bam (alignments); assembly: GRCh38 alignments GRCh38 22.4 MB link
ENCFF829FDR ENCFF829FDR.bam bam (alignments); assembly: GRCh38 alignments GRCh38 37.6 MB link
ENCFF620GJH ENCFF620GJH.bam bam (alignments); assembly: hg19 alignments hg19 23.8 MB link
ENCFF852ZSI ENCFF852ZSI.bam bam (alignments); assembly: hg19 alignments hg19 39.1 MB link
ENCFF239GPP ENCFF239GPP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.6 KB link
ENCFF712HCB ENCFF712HCB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 160.2 KB link
ENCFF826MPO ENCFF826MPO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 99.6 KB link
ENCFF207VRH ENCFF207VRH.bed bed (peaks); assembly: hg19 peaks hg19 107.2 KB link
ENCFF901ABJ ENCFF901ABJ.bed bed (peaks); assembly: hg19 peaks hg19 1.7 KB link
ENCFF942LSK ENCFF942LSK.bed bed (peaks); assembly: hg19 peaks hg19 168.2 KB link
ENCFF243VMV ENCFF243VMV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 364.7 KB link
ENCFF754WPL ENCFF754WPL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 269.4 KB link
ENCFF151FJE ENCFF151FJE.bigBed bigBed (peaks); assembly: hg19 peaks hg19 281.4 KB link
ENCFF739HZG ENCFF739HZG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 375.8 KB link
ENCFF321VGW ENCFF321VGW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 1.2 MB link
ENCFF526SPD ENCFF526SPD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 2.3 MB link
ENCFF162ZXD ENCFF162ZXD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 1.2 MB link
ENCFF956LBV ENCFF956LBV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.3 MB link
ENCFF160AGW ENCFF160AGW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 1.2 MB link
ENCFF971TGH ENCFF971TGH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 2.4 MB link
ENCFF009JLQ ENCFF009JLQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 1.3 MB link
ENCFF091RCB ENCFF091RCB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 2.4 MB link
ENCFF126HSF ENCFF126HSF.fastq fastq (reads) reads 56.6 MB link
ENCFF171KZO ENCFF171KZO.fastq fastq (reads) reads 49.4 MB link
ENCFF813UKO ENCFF813UKO.fastq fastq (reads) reads 99.7 MB link
ENCFF987DVU ENCFF987DVU.fastq fastq (reads) reads 86.9 MB link