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ENCSR018WPY

ENCSR ENCODE
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eCLIP experiment on HepG2 against AQR

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR716AKC

Summary

eCLIP of AQR in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against AQR

Analysis

View Data Processing
Analysis page is available for ENCSR018WPY.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.2 GB
Assay: eCLIP
Target: AQR
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF882PEQ ENCFF882PEQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 301.9 MB link
ENCFF947JHV ENCFF947JHV.bam bam (alignments); assembly: GRCh38 alignments GRCh38 271.0 MB link
ENCFF072DMC ENCFF072DMC.bam bam (alignments); assembly: hg19 alignments hg19 322.7 MB link
ENCFF615YND ENCFF615YND.bam bam (alignments); assembly: hg19 alignments hg19 279.2 MB link
ENCFF073PST ENCFF073PST.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.3 MB link
ENCFF323PUC ENCFF323PUC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 229.1 KB link
ENCFF636MSJ ENCFF636MSJ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF016UFV ENCFF016UFV.bed bed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF351RHN ENCFF351RHN.bed bed (peaks); assembly: hg19 peaks hg19 230.9 KB link
ENCFF791WOH ENCFF791WOH.bed bed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF163SMI ENCFF163SMI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.1 MB link
ENCFF480KMS ENCFF480KMS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.6 MB link
ENCFF752JLL ENCFF752JLL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.7 MB link
ENCFF817TIH ENCFF817TIH.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.1 MB link
ENCFF159YFB ENCFF159YFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 10.4 MB link
ENCFF393QAA ENCFF393QAA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 13.6 MB link
ENCFF135VSZ ENCFF135VSZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 14.2 MB link
ENCFF990SEI ENCFF990SEI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 10.6 MB link
ENCFF484VYD ENCFF484VYD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.9 MB link
ENCFF495SJR ENCFF495SJR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 10.6 MB link
ENCFF874FLM ENCFF874FLM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.9 MB link
ENCFF886TQE ENCFF886TQE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 14.5 MB link
ENCFF019WXR ENCFF019WXR.fastq fastq (reads) reads 407.8 MB link
ENCFF166EBF ENCFF166EBF.fastq fastq (reads) reads 459.0 MB link
ENCFF455ERC ENCFF455ERC.fastq fastq (reads) reads 543.1 MB link
ENCFF985BEH ENCFF985BEH.fastq fastq (reads) reads 585.2 MB link