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ENCSR647HOX

ENCSR ENCODE
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eCLIP experiment on HepG2 against HLTF

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR705DCQ

Summary

eCLIP of HLTF in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against HLTF

Analysis

View Data Processing
Analysis page is available for ENCSR647HOX.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 6.2 GB
Assay: eCLIP
Target: HLTF
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF293ZZT ENCFF293ZZT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 748.7 MB link
ENCFF757PDP ENCFF757PDP.bam bam (alignments); assembly: GRCh38 alignments GRCh38 722.9 MB link
ENCFF748PZV ENCFF748PZV.bam bam (alignments); assembly: hg19 alignments hg19 773.4 MB link
ENCFF773TEB ENCFF773TEB.bam bam (alignments); assembly: hg19 alignments hg19 758.6 MB link
ENCFF048FDF ENCFF048FDF.bed bed (peaks); assembly: GRCh38 peaks GRCh38 73.6 KB link
ENCFF252MTE ENCFF252MTE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.9 MB link
ENCFF991OSY ENCFF991OSY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.9 MB link
ENCFF250KNJ ENCFF250KNJ.bed bed (peaks); assembly: hg19 peaks hg19 2.9 MB link
ENCFF410XHF ENCFF410XHF.bed bed (peaks); assembly: hg19 peaks hg19 71.8 KB link
ENCFF490MGU ENCFF490MGU.bed bed (peaks); assembly: hg19 peaks hg19 3.0 MB link
ENCFF211XSC ENCFF211XSC.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.7 MB link
ENCFF497PQA ENCFF497PQA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.7 MB link
ENCFF275AVL ENCFF275AVL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.8 MB link
ENCFF435YXZ ENCFF435YXZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.7 MB link
ENCFF174WGM ENCFF174WGM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 35.7 MB link
ENCFF414EIL ENCFF414EIL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 34.7 MB link
ENCFF364NWX ENCFF364NWX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 35.9 MB link
ENCFF803VYU ENCFF803VYU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 36.6 MB link
ENCFF050VIB ENCFF050VIB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 34.8 MB link
ENCFF552BMC ENCFF552BMC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 36.3 MB link
ENCFF541TNR ENCFF541TNR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 37.2 MB link
ENCFF992HAM ENCFF992HAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 36.5 MB link
ENCFF150BXG ENCFF150BXG.fastq fastq (reads) reads 860.3 MB link
ENCFF255ZCV ENCFF255ZCV.fastq fastq (reads) reads 836.5 MB link
ENCFF622ZDB ENCFF622ZDB.fastq fastq (reads) reads 690.3 MB link
ENCFF992EIC ENCFF992EIC.fastq fastq (reads) reads 671.9 MB link