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ENCSR322HHA

ENCSR ENCODE
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eCLIP experiment on HepG2 against TIAL1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR599YGK

Summary

eCLIP of TIAL1 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against TIAL1

Analysis

View Data Processing
Analysis page is available for ENCSR322HHA.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.0 GB
Assay: eCLIP
Target: TIAL1
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF413UKK ENCFF413UKK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 212.7 MB link
ENCFF902OZA ENCFF902OZA.bam bam (alignments); assembly: GRCh38 alignments GRCh38 282.4 MB link
ENCFF118ANT ENCFF118ANT.bam bam (alignments); assembly: hg19 alignments hg19 292.1 MB link
ENCFF620WSX ENCFF620WSX.bam bam (alignments); assembly: hg19 alignments hg19 228.1 MB link
ENCFF302ROS ENCFF302ROS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF467UOO ENCFF467UOO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 936.2 KB link
ENCFF612HOP ENCFF612HOP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 51.9 KB link
ENCFF387ZAH ENCFF387ZAH.bed bed (peaks); assembly: hg19 peaks hg19 53.4 KB link
ENCFF456DAU ENCFF456DAU.bed bed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF473IIG ENCFF473IIG.bed bed (peaks); assembly: hg19 peaks hg19 1001.8 KB link
ENCFF089ZJS ENCFF089ZJS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF613MXF ENCFF613MXF.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.0 MB link
ENCFF078OCN ENCFF078OCN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF624IBZ ENCFF624IBZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF080ZJK ENCFF080ZJK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 15.1 MB link
ENCFF777OKN ENCFF777OKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 12.0 MB link
ENCFF253ZDJ ENCFF253ZDJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 15.5 MB link
ENCFF674HCV ENCFF674HCV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 12.7 MB link
ENCFF297REJ ENCFF297REJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 12.4 MB link
ENCFF513PTO ENCFF513PTO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 15.3 MB link
ENCFF062MYF ENCFF062MYF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.1 MB link
ENCFF835AWK ENCFF835AWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 15.7 MB link
ENCFF164ZGA ENCFF164ZGA.fastq fastq (reads) reads 220.3 MB link
ENCFF430UQQ ENCFF430UQQ.fastq fastq (reads) reads 246.9 MB link
ENCFF708YAL ENCFF708YAL.fastq fastq (reads) reads 213.6 MB link
ENCFF959XKN ENCFF959XKN.fastq fastq (reads) reads 189.5 MB link