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ENCSR734ZHL

ENCSR ENCODE
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eCLIP experiment on K562 against UTP3

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR241ALC

Summary

eCLIP of UTP3 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against UTP3

Analysis

View Data Processing
Analysis page is available for ENCSR734ZHL.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.3 GB
Assay: eCLIP
Target: UTP3
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF612HAQ ENCFF612HAQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 13.1 MB link
ENCFF826UUS ENCFF826UUS.bam bam (alignments); assembly: GRCh38 alignments GRCh38 28.4 MB link
ENCFF182NRE ENCFF182NRE.bam bam (alignments); assembly: hg19 alignments hg19 28.9 MB link
ENCFF317ALA ENCFF317ALA.bam bam (alignments); assembly: hg19 alignments hg19 13.2 MB link
ENCFF028GAJ ENCFF028GAJ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 472.0 B link
ENCFF106YFV ENCFF106YFV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 516.7 KB link
ENCFF484NSW ENCFF484NSW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 860.1 KB link
ENCFF122OMX ENCFF122OMX.bed bed (peaks); assembly: hg19 peaks hg19 515.9 KB link
ENCFF739KMN ENCFF739KMN.bed bed (peaks); assembly: hg19 peaks hg19 863.1 KB link
ENCFF832JDM ENCFF832JDM.bed bed (peaks); assembly: hg19 peaks hg19 561.0 B link
ENCFF669GII ENCFF669GII.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.0 MB link
ENCFF762RZG ENCFF762RZG.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF306WLX ENCFF306WLX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.0 MB link
ENCFF712PFK ENCFF712PFK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF247UQF ENCFF247UQF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 1.7 MB link
ENCFF584CAL ENCFF584CAL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 715.9 KB link
ENCFF237VQW ENCFF237VQW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 719.0 KB link
ENCFF683WHG ENCFF683WHG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 1.7 MB link
ENCFF115DFJ ENCFF115DFJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 1.8 MB link
ENCFF363DGG ENCFF363DGG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 764.2 KB link
ENCFF584UPG ENCFF584UPG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 766.5 KB link
ENCFF979FJC ENCFF979FJC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 1.8 MB link
ENCFF037SFC ENCFF037SFC.fastq fastq (reads) reads 756.9 MB link
ENCFF085FSS ENCFF085FSS.fastq fastq (reads) reads 715.4 MB link
ENCFF612CUM ENCFF612CUM.fastq fastq (reads) reads 356.5 MB link
ENCFF901ESA ENCFF901ESA.fastq fastq (reads) reads 376.9 MB link