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ENCSR876EYA

ENCSR ENCODE
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eCLIP experiment on HepG2 against BCLAF1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR128BUO

Summary

eCLIP of BCLAF1 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against BCLAF1

Analysis

View Data Processing
Analysis page is available for ENCSR876EYA.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 4.2 GB
Assay: eCLIP
Target: BCLAF1
Biosample: Homo sapiens HepG2
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF510PFS ENCFF510PFS.bam bam (alignments); assembly: GRCh38 alignments GRCh38 450.7 MB link
ENCFF673LOJ ENCFF673LOJ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 676.7 MB link
ENCFF139XGO ENCFF139XGO.bam bam (alignments); assembly: hg19 alignments hg19 704.7 MB link
ENCFF376EDQ ENCFF376EDQ.bam bam (alignments); assembly: hg19 alignments hg19 463.1 MB link
ENCFF797YXM ENCFF797YXM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.1 MB link
ENCFF810EUA ENCFF810EUA.bed bed (peaks); assembly: GRCh38 peaks GRCh38 728.0 KB link
ENCFF936QEL ENCFF936QEL.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.6 MB link
ENCFF691JPV ENCFF691JPV.bed bed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF858HBB ENCFF858HBB.bed bed (peaks); assembly: hg19 peaks hg19 2.6 MB link
ENCFF930HHV ENCFF930HHV.bed bed (peaks); assembly: hg19 peaks hg19 731.3 KB link
ENCFF620THE ENCFF620THE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.0 MB link
ENCFF763JKN ENCFF763JKN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.1 MB link
ENCFF324DAY ENCFF324DAY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.1 MB link
ENCFF662YRG ENCFF662YRG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.9 MB link
ENCFF355PUZ ENCFF355PUZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 21.2 MB link
ENCFF723VKJ ENCFF723VKJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 29.1 MB link
ENCFF136WMY ENCFF136WMY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 29.8 MB link
ENCFF919WGD ENCFF919WGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 22.0 MB link
ENCFF829FER ENCFF829FER.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 29.4 MB link
ENCFF837DWG ENCFF837DWG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 21.5 MB link
ENCFF094BEK ENCFF094BEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 30.1 MB link
ENCFF274RUU ENCFF274RUU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 21.9 MB link
ENCFF033JHH ENCFF033JHH.fastq fastq (reads) reads 569.9 MB link
ENCFF463HOI ENCFF463HOI.fastq fastq (reads) reads 319.5 MB link
ENCFF490SCE ENCFF490SCE.fastq fastq (reads) reads 572.4 MB link
ENCFF695FAB ENCFF695FAB.fastq fastq (reads) reads 324.1 MB link