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ENCSR069EVH

ENCSR ENCODE
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eCLIP experiment on K562 against FUS

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR389ISM

Summary

eCLIP of FUS in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against FUS

Analysis

View Data Processing
Analysis page is available for ENCSR069EVH.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 9.3 GB
Assay: eCLIP
Target: FUS
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF210ZRQ ENCFF210ZRQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 1.1 GB link
ENCFF341YQM ENCFF341YQM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 946.9 MB link
ENCFF297CPZ ENCFF297CPZ.bam bam (alignments); assembly: hg19 alignments hg19 1.2 GB link
ENCFF763LLF ENCFF763LLF.bam bam (alignments); assembly: hg19 alignments hg19 987.5 MB link
ENCFF443KJS ENCFF443KJS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.1 MB link
ENCFF565ILV ENCFF565ILV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.3 MB link
ENCFF861KMV ENCFF861KMV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 99.1 KB link
ENCFF446LST ENCFF446LST.bed bed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF764SZR ENCFF764SZR.bed bed (peaks); assembly: hg19 peaks hg19 2.3 MB link
ENCFF777FHS ENCFF777FHS.bed bed (peaks); assembly: hg19 peaks hg19 96.3 KB link
ENCFF549AQN ENCFF549AQN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.3 MB link
ENCFF780JIH ENCFF780JIH.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.9 MB link
ENCFF476CZI ENCFF476CZI.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.9 MB link
ENCFF588UCW ENCFF588UCW.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.4 MB link
ENCFF362UCS ENCFF362UCS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 43.4 MB link
ENCFF553EEX ENCFF553EEX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 37.7 MB link
ENCFF390SKN ENCFF390SKN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 38.8 MB link
ENCFF871EJX ENCFF871EJX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 45.5 MB link
ENCFF364FLH ENCFF364FLH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 39.5 MB link
ENCFF674POL ENCFF674POL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 45.4 MB link
ENCFF079PJI ENCFF079PJI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 47.6 MB link
ENCFF113CHP ENCFF113CHP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 40.7 MB link
ENCFF307BRQ ENCFF307BRQ.fastq fastq (reads) reads 1.2 GB link
ENCFF336ZEJ ENCFF336ZEJ.fastq fastq (reads) reads 1.0 GB link
ENCFF554AWP ENCFF554AWP.fastq fastq (reads) reads 1.2 GB link
ENCFF841ZLV ENCFF841ZLV.fastq fastq (reads) reads 1.4 GB link