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ENCSR586DGV

ENCSR ENCODE
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eCLIP experiment on K562 against ZNF800

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR615ZYL

Summary

eCLIP of ZNF800 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against ZNF800

Analysis

View Data Processing
Analysis page is available for ENCSR586DGV.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.2 GB
Assay: eCLIP
Target: ZNF800
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF420ZEI ENCFF420ZEI.bam bam (alignments); assembly: GRCh38 alignments GRCh38 184.4 MB link
ENCFF693MLV ENCFF693MLV.bam bam (alignments); assembly: GRCh38 alignments GRCh38 123.6 MB link
ENCFF270YPL ENCFF270YPL.bam bam (alignments); assembly: hg19 alignments hg19 131.2 MB link
ENCFF303MEM ENCFF303MEM.bam bam (alignments); assembly: hg19 alignments hg19 189.4 MB link
ENCFF105HMJ ENCFF105HMJ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 54.9 KB link
ENCFF672MYG ENCFF672MYG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 871.1 KB link
ENCFF780IYG ENCFF780IYG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 610.8 KB link
ENCFF579NNP ENCFF579NNP.bed bed (peaks); assembly: hg19 peaks hg19 54.3 KB link
ENCFF787LVR ENCFF787LVR.bed bed (peaks); assembly: hg19 peaks hg19 872.2 KB link
ENCFF806GQI ENCFF806GQI.bed bed (peaks); assembly: hg19 peaks hg19 632.1 KB link
ENCFF126RXG ENCFF126RXG.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF673MQR ENCFF673MQR.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF348CSA ENCFF348CSA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF947GNX ENCFF947GNX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF732MSM ENCFF732MSM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 9.0 MB link
ENCFF737BYL ENCFF737BYL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.3 MB link
ENCFF338YTK ENCFF338YTK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.5 MB link
ENCFF425RIV ENCFF425RIV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 9.3 MB link
ENCFF028XAW ENCFF028XAW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 9.5 MB link
ENCFF710MTZ ENCFF710MTZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.5 MB link
ENCFF334TXK ENCFF334TXK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 9.6 MB link
ENCFF417BRA ENCFF417BRA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.7 MB link
ENCFF009EJC ENCFF009EJC.fastq fastq (reads) reads 843.8 MB link
ENCFF631INY ENCFF631INY.fastq fastq (reads) reads 533.4 MB link
ENCFF642EHH ENCFF642EHH.fastq fastq (reads) reads 719.1 MB link
ENCFF737XQX ENCFF737XQX.fastq fastq (reads) reads 442.0 MB link