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ENCSR570WLM

ENCSR ENCODE
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eCLIP experiment on HepG2 against QKI

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR130TOJ

Summary

eCLIP of QKI in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against QKI

Analysis

View Data Processing
Analysis page is available for ENCSR570WLM.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 6.1 GB
Assay: eCLIP
Target: QKI
Biosample: Homo sapiens HepG2
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF567ADV ENCFF567ADV.bam bam (alignments); assembly: GRCh38 alignments GRCh38 555.1 MB link
ENCFF862YVK ENCFF862YVK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 323.2 MB link
ENCFF081ZJS ENCFF081ZJS.bam bam (alignments); assembly: hg19 alignments hg19 346.6 MB link
ENCFF179YDO ENCFF179YDO.bam bam (alignments); assembly: hg19 alignments hg19 576.7 MB link
ENCFF299VTZ ENCFF299VTZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 279.3 KB link
ENCFF551IJQ ENCFF551IJQ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.8 MB link
ENCFF704OCI ENCFF704OCI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 213.9 KB link
ENCFF714ZTU ENCFF714ZTU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 260.3 KB link
ENCFF815XNW ENCFF815XNW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.0 MB link
ENCFF445CGF ENCFF445CGF.bed bed (peaks); assembly: hg19 peaks hg19 221.5 KB link
ENCFF454GLW ENCFF454GLW.bed bed (peaks); assembly: hg19 peaks hg19 720.3 KB link
ENCFF459ANM ENCFF459ANM.bed bed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF525PZA ENCFF525PZA.bed bed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF544QKV ENCFF544QKV.bed bed (peaks); assembly: hg19 peaks hg19 680.8 KB link
ENCFF594IKL ENCFF594IKL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.3 MB link
ENCFF834HHP ENCFF834HHP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 513.5 KB link
ENCFF941YPK ENCFF941YPK.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 636.4 KB link
ENCFF984WOV ENCFF984WOV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.3 MB link
ENCFF183VLS ENCFF183VLS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.4 MB link
ENCFF236FAE ENCFF236FAE.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.7 MB link
ENCFF480VGI ENCFF480VGI.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF870PAN ENCFF870PAN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.0 MB link
ENCFF887ZND ENCFF887ZND.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.4 MB link
ENCFF998ASJ ENCFF998ASJ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF452EOC ENCFF452EOC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 17.6 MB link
ENCFF860YHG ENCFF860YHG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 25.4 MB link
ENCFF683OAO ENCFF683OAO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 18.4 MB link
ENCFF810CHK ENCFF810CHK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 26.0 MB link
ENCFF074DRB ENCFF074DRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 25.5 MB link
ENCFF420RBU ENCFF420RBU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 18.0 MB link
ENCFF542XZB ENCFF542XZB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 18.9 MB link
ENCFF723OPP ENCFF723OPP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 26.6 MB link
ENCFF180SZL ENCFF180SZL.fastq fastq (reads) reads 1.1 GB link
ENCFF444DES ENCFF444DES.fastq fastq (reads) reads 1019.9 MB link
ENCFF540VOG ENCFF540VOG.fastq fastq (reads) reads 1.0 GB link
ENCFF746GSO ENCFF746GSO.fastq fastq (reads) reads 1.1 GB link