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ENCSR022BVV

ENCSR ENCODE
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eCLIP experiment on K562 against LSM11

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR952UOL

Summary

eCLIP of LSM11 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against LSM11

Analysis

View Data Processing
Analysis page is available for ENCSR022BVV.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 3.5 GB
Assay: eCLIP
Target: LSM11
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF938CFK ENCFF938CFK.bam bam (alignments); assembly: GRCh38 alignments GRCh38 221.4 MB link
ENCFF989NBF ENCFF989NBF.bam bam (alignments); assembly: GRCh38 alignments GRCh38 400.8 MB link
ENCFF608XEX ENCFF608XEX.bam bam (alignments); assembly: hg19 alignments hg19 413.2 MB link
ENCFF636BMJ ENCFF636BMJ.bam bam (alignments); assembly: hg19 alignments hg19 232.4 MB link
ENCFF438KND ENCFF438KND.bed bed (peaks); assembly: GRCh38 peaks GRCh38 154.0 KB link
ENCFF513FCX ENCFF513FCX.bed bed (peaks); assembly: GRCh38 peaks GRCh38 198.6 KB link
ENCFF733BEV ENCFF733BEV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.0 MB link
ENCFF760VJY ENCFF760VJY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.7 MB link
ENCFF858EHN ENCFF858EHN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 28.2 KB link
ENCFF136HXF ENCFF136HXF.bed bed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF418GUW ENCFF418GUW.bed bed (peaks); assembly: hg19 peaks hg19 448.4 KB link
ENCFF425PPQ ENCFF425PPQ.bed bed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF538ZHY ENCFF538ZHY.bed bed (peaks); assembly: hg19 peaks hg19 28.1 KB link
ENCFF597NUC ENCFF597NUC.bed bed (peaks); assembly: hg19 peaks hg19 586.1 KB link
ENCFF005VLT ENCFF005VLT.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.4 MB link
ENCFF097BXD ENCFF097BXD.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 408.9 KB link
ENCFF350QMY ENCFF350QMY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF816DGB ENCFF816DGB.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 468.2 KB link
ENCFF116WPI ENCFF116WPI.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF366PDK ENCFF366PDK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF414DIO ENCFF414DIO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.4 MB link
ENCFF590STZ ENCFF590STZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 902.1 KB link
ENCFF889WRY ENCFF889WRY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF938ROF ENCFF938ROF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF058BLU ENCFF058BLU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 12.3 MB link
ENCFF680ZUK ENCFF680ZUK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 21.1 MB link
ENCFF484RUT ENCFF484RUT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 21.6 MB link
ENCFF955SIM ENCFF955SIM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 12.7 MB link
ENCFF329QOR ENCFF329QOR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 12.9 MB link
ENCFF583VFV ENCFF583VFV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 22.0 MB link
ENCFF318QEW ENCFF318QEW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 13.5 MB link
ENCFF516OSP ENCFF516OSP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 22.9 MB link
ENCFF203JSP ENCFF203JSP.fastq fastq (reads) reads 523.7 MB link
ENCFF408YYK ENCFF408YYK.fastq fastq (reads) reads 535.7 MB link
ENCFF875THF ENCFF875THF.fastq fastq (reads) reads 534.1 MB link
ENCFF924IHY ENCFF924IHY.fastq fastq (reads) reads 526.9 MB link