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ENCSR947JVR

ENCSR ENCODE
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eCLIP experiment on K562 against DGCR8

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR616BTD

Summary

eCLIP of DGCR8 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against DGCR8

Analysis

View Data Processing
Analysis page is available for ENCSR947JVR.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 1.7 GB
Assay: eCLIP
Target: DGCR8
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF023RGT ENCFF023RGT.bam bam (alignments); assembly: GRCh38 alignments GRCh38 184.2 MB link
ENCFF843HDQ ENCFF843HDQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 173.1 MB link
ENCFF491LUG ENCFF491LUG.bam bam (alignments); assembly: hg19 alignments hg19 173.9 MB link
ENCFF614EMY ENCFF614EMY.bam bam (alignments); assembly: hg19 alignments hg19 184.8 MB link
ENCFF023YVD ENCFF023YVD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 29.2 KB link
ENCFF141IID ENCFF141IID.bed bed (peaks); assembly: GRCh38 peaks GRCh38 731.5 KB link
ENCFF205CTB ENCFF205CTB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 130.7 KB link
ENCFF264ODZ ENCFF264ODZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 639.8 KB link
ENCFF712GUN ENCFF712GUN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 111.3 KB link
ENCFF239WCW ENCFF239WCW.bed bed (peaks); assembly: hg19 peaks hg19 29.1 KB link
ENCFF349ZQI ENCFF349ZQI.bed bed (peaks); assembly: hg19 peaks hg19 292.8 KB link
ENCFF735UHA ENCFF735UHA.bed bed (peaks); assembly: hg19 peaks hg19 641.3 KB link
ENCFF864HVZ ENCFF864HVZ.bed bed (peaks); assembly: hg19 peaks hg19 343.0 KB link
ENCFF887LSX ENCFF887LSX.bed bed (peaks); assembly: hg19 peaks hg19 730.6 KB link
ENCFF077YUF ENCFF077YUF.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 325.9 KB link
ENCFF682SYA ENCFF682SYA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.3 MB link
ENCFF719GZA ENCFF719GZA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF721GOR ENCFF721GOR.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 361.0 KB link
ENCFF015KTU ENCFF015KTU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF180COD ENCFF180COD.bigBed bigBed (peaks); assembly: hg19 peaks hg19 649.6 KB link
ENCFF472DEV ENCFF472DEV.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF642UGL ENCFF642UGL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 732.4 KB link
ENCFF752RAX ENCFF752RAX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF799XKD ENCFF799XKD.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF311HEG ENCFF311HEG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 9.9 MB link
ENCFF402WTV ENCFF402WTV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 10.1 MB link
ENCFF799FTL ENCFF799FTL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 9.9 MB link
ENCFF945ITD ENCFF945ITD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 10.1 MB link
ENCFF321LLR ENCFF321LLR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 10.2 MB link
ENCFF555GID ENCFF555GID.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 10.5 MB link
ENCFF303NPB ENCFF303NPB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.3 MB link
ENCFF601RGF ENCFF601RGF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 10.6 MB link
ENCFF162KZD ENCFF162KZD.fastq fastq (reads) reads 227.8 MB link
ENCFF370UVC ENCFF370UVC.fastq fastq (reads) reads 212.0 MB link
ENCFF905DBX ENCFF905DBX.fastq fastq (reads) reads 250.4 MB link
ENCFF969KXX ENCFF969KXX.fastq fastq (reads) reads 197.9 MB link