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ENCSR520BZQ

ENCSR ENCODE
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eCLIP experiment on K562 against HNRNPU

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR829SLO

Summary

eCLIP of HNRNPU in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against HNRNPU

Analysis

View Data Processing
Analysis page is available for ENCSR520BZQ.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 9.6 GB
Assay: eCLIP
Target: HNRNPU
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF025YVA ENCFF025YVA.bam bam (alignments); assembly: GRCh38 alignments GRCh38 1.0 GB link
ENCFF197OBL ENCFF197OBL.bam bam (alignments); assembly: GRCh38 alignments GRCh38 1.5 GB link
ENCFF439LWC ENCFF439LWC.bam bam (alignments); assembly: hg19 alignments hg19 1.5 GB link
ENCFF881JZG ENCFF881JZG.bam bam (alignments); assembly: hg19 alignments hg19 1.0 GB link
ENCFF241DVU ENCFF241DVU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 4.8 KB link
ENCFF408HQB ENCFF408HQB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 4.5 MB link
ENCFF464SKW ENCFF464SKW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 220.8 KB link
ENCFF638WUB ENCFF638WUB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 5.8 MB link
ENCFF759QAQ ENCFF759QAQ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 222.4 KB link
ENCFF014BXV ENCFF014BXV.bed bed (peaks); assembly: hg19 peaks hg19 4.4 MB link
ENCFF465SHB ENCFF465SHB.bed bed (peaks); assembly: hg19 peaks hg19 630.8 KB link
ENCFF844VZT ENCFF844VZT.bed bed (peaks); assembly: hg19 peaks hg19 4.9 KB link
ENCFF895OXA ENCFF895OXA.bed bed (peaks); assembly: hg19 peaks hg19 608.2 KB link
ENCFF960NDY ENCFF960NDY.bed bed (peaks); assembly: hg19 peaks hg19 5.8 MB link
ENCFF016LPW ENCFF016LPW.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 7.7 MB link
ENCFF342RVP ENCFF342RVP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 569.0 KB link
ENCFF886MQH ENCFF886MQH.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 575.9 KB link
ENCFF901WKP ENCFF901WKP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 9.6 MB link
ENCFF046DNV ENCFF046DNV.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.3 MB link
ENCFF260RZZ ENCFF260RZZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF382TQQ ENCFF382TQQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 9.5 MB link
ENCFF755NIP ENCFF755NIP.bigBed bigBed (peaks); assembly: hg19 peaks hg19 7.6 MB link
ENCFF868OFV ENCFF868OFV.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF911FOB ENCFF911FOB.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF701SGQ ENCFF701SGQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 50.6 MB link
ENCFF824KTJ ENCFF824KTJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 75.1 MB link
ENCFF145GGH ENCFF145GGH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 50.7 MB link
ENCFF496BVF ENCFF496BVF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 75.2 MB link
ENCFF235IOB ENCFF235IOB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 53.3 MB link
ENCFF274WHB ENCFF274WHB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 78.8 MB link
ENCFF451BJT ENCFF451BJT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 79.1 MB link
ENCFF588ALN ENCFF588ALN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 53.4 MB link
ENCFF089LNF ENCFF089LNF.fastq fastq (reads) reads 706.3 MB link
ENCFF145OZZ ENCFF145OZZ.fastq fastq (reads) reads 1.3 GB link
ENCFF253HOY ENCFF253HOY.fastq fastq (reads) reads 718.0 MB link
ENCFF384LLO ENCFF384LLO.fastq fastq (reads) reads 1.2 GB link