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ENCSR565DGW

ENCSR ENCODE
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eCLIP experiment on HepG2 against DHX30

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR151MPZ

Summary

eCLIP of DHX30 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against DHX30

Analysis

View Data Processing
Analysis page is available for ENCSR565DGW.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 3.7 GB
Assay: eCLIP
Target: DHX30
Biosample: Homo sapiens HepG2
Files: 34
Unique ENC file IDs: 34
File Formats
bed (10) bigBed (8) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (18) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (34)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF705YYZ ENCFF705YYZ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 267.3 MB link
ENCFF809XHX ENCFF809XHX.bam bam (alignments); assembly: GRCh38 alignments GRCh38 205.5 MB link
ENCFF259ZLG ENCFF259ZLG.bam bam (alignments); assembly: hg19 alignments hg19 215.5 MB link
ENCFF678OCJ ENCFF678OCJ.bam bam (alignments); assembly: hg19 alignments hg19 276.9 MB link
ENCFF143TAM ENCFF143TAM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF190UCK ENCFF190UCK.bed bed (peaks); assembly: GRCh38 peaks GRCh38 941.3 KB link
ENCFF381HWO ENCFF381HWO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 159.2 KB link
ENCFF663QIZ ENCFF663QIZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 4.4 KB link
ENCFF864ZAU ENCFF864ZAU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 144.7 KB link
ENCFF098AQK ENCFF098AQK.bed bed (peaks); assembly: hg19 peaks hg19 469.3 KB link
ENCFF174FQS ENCFF174FQS.bed bed (peaks); assembly: hg19 peaks hg19 420.1 KB link
ENCFF191HRQ ENCFF191HRQ.bed bed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF233ZXV ENCFF233ZXV.bed bed (peaks); assembly: hg19 peaks hg19 4.3 KB link
ENCFF506NPG ENCFF506NPG.bed bed (peaks); assembly: hg19 peaks hg19 975.2 KB link
ENCFF294OYP ENCFF294OYP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF508MIM ENCFF508MIM.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 408.2 KB link
ENCFF523LNK ENCFF523LNK.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.1 MB link
ENCFF600ILL ENCFF600ILL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 394.4 KB link
ENCFF049PPF ENCFF049PPF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF914TDS ENCFF914TDS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF930QLC ENCFF930QLC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 923.9 KB link
ENCFF942GGL ENCFF942GGL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 867.0 KB link
ENCFF183AUG ENCFF183AUG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 8.3 MB link
ENCFF686GZG ENCFF686GZG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 13.7 MB link
ENCFF172NCN ENCFF172NCN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.4 MB link
ENCFF974MYW ENCFF974MYW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 14.0 MB link
ENCFF431RWW ENCFF431RWW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 8.4 MB link
ENCFF718GOT ENCFF718GOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 14.0 MB link
ENCFF061CZT ENCFF061CZT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 14.3 MB link
ENCFF921CGQ ENCFF921CGQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 11.6 MB link
ENCFF797NFN ENCFF797NFN.fastq fastq (reads) reads 652.1 MB link
ENCFF827KOV ENCFF827KOV.fastq fastq (reads) reads 706.6 MB link
ENCFF831CXB ENCFF831CXB.fastq fastq (reads) reads 709.6 MB link
ENCFF969FSD ENCFF969FSD.fastq fastq (reads) reads 653.0 MB link