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ENCSR568DZW

ENCSR ENCODE
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eCLIP experiment on K562 against TAF15

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR653CNZ

Summary

eCLIP of TAF15 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against TAF15

Analysis

View Data Processing
Analysis page is available for ENCSR568DZW.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 3.0 GB
Assay: eCLIP
Target: TAF15
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF044RGH ENCFF044RGH.bam bam (alignments); assembly: GRCh38 alignments GRCh38 422.5 MB link
ENCFF501PCN ENCFF501PCN.bam bam (alignments); assembly: GRCh38 alignments GRCh38 417.6 MB link
ENCFF797IKQ ENCFF797IKQ.bam bam (alignments); assembly: hg19 alignments hg19 422.7 MB link
ENCFF959XVH ENCFF959XVH.bam bam (alignments); assembly: hg19 alignments hg19 413.1 MB link
ENCFF008QVV ENCFF008QVV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 122.4 KB link
ENCFF064SNG ENCFF064SNG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 122.6 KB link
ENCFF409DPS ENCFF409DPS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF822NWY ENCFF822NWY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 12.1 KB link
ENCFF996BXS ENCFF996BXS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF131ZWK ENCFF131ZWK.bed bed (peaks); assembly: hg19 peaks hg19 12.3 KB link
ENCFF783IGF ENCFF783IGF.bed bed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF810WKM ENCFF810WKM.bed bed (peaks); assembly: hg19 peaks hg19 356.3 KB link
ENCFF979IVI ENCFF979IVI.bed bed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF985KXJ ENCFF985KXJ.bed bed (peaks); assembly: hg19 peaks hg19 360.4 KB link
ENCFF211PKX ENCFF211PKX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.8 MB link
ENCFF319ZVV ENCFF319ZVV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 337.4 KB link
ENCFF375MMT ENCFF375MMT.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.9 MB link
ENCFF614CHS ENCFF614CHS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 340.4 KB link
ENCFF111AKF ENCFF111AKF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF267QNA ENCFF267QNA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF284FIC ENCFF284FIC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF476LZT ENCFF476LZT.bigBed bigBed (peaks); assembly: hg19 peaks hg19 738.9 KB link
ENCFF659WCC ENCFF659WCC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF748BCQ ENCFF748BCQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 730.7 KB link
ENCFF225ZZO ENCFF225ZZO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 20.2 MB link
ENCFF639RAN ENCFF639RAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 20.6 MB link
ENCFF060GPY ENCFF060GPY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 20.0 MB link
ENCFF985AJE ENCFF985AJE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 20.4 MB link
ENCFF576QRC ENCFF576QRC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 21.1 MB link
ENCFF778THT ENCFF778THT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 21.6 MB link
ENCFF340JJV ENCFF340JJV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 20.9 MB link
ENCFF932ZIK ENCFF932ZIK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 21.6 MB link
ENCFF364URW ENCFF364URW.fastq fastq (reads) reads 318.3 MB link
ENCFF646IFT ENCFF646IFT.fastq fastq (reads) reads 305.6 MB link
ENCFF798VKV ENCFF798VKV.fastq fastq (reads) reads 269.7 MB link
ENCFF915ATC ENCFF915ATC.fastq fastq (reads) reads 346.9 MB link