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ENCSR867ZVK

ENCSR ENCODE
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eCLIP experiment on K562 against YWHAG

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR812PBU

Summary

eCLIP of YWHAG in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against YWHAG

Analysis

View Data Processing
Analysis page is available for ENCSR867ZVK.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 2.1 GB
Assay: eCLIP
Target: YWHAG
Biosample: Homo sapiens K562
Files: 35
Unique ENC file IDs: 35
File Formats
bed (10) bigBed (9) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (19) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (35)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF052ORJ ENCFF052ORJ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 163.5 MB link
ENCFF186FHG ENCFF186FHG.bam bam (alignments); assembly: GRCh38 alignments GRCh38 198.3 MB link
ENCFF352NIP ENCFF352NIP.bam bam (alignments); assembly: hg19 alignments hg19 172.6 MB link
ENCFF463WLQ ENCFF463WLQ.bam bam (alignments); assembly: hg19 alignments hg19 207.1 MB link
ENCFF103TFM ENCFF103TFM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 600.7 KB link
ENCFF145AKE ENCFF145AKE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 97.1 KB link
ENCFF471XES ENCFF471XES.bed bed (peaks); assembly: GRCh38 peaks GRCh38 120.2 KB link
ENCFF741UNZ ENCFF741UNZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 751.7 KB link
ENCFF932UXC ENCFF932UXC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 16.2 KB link
ENCFF240CRZ ENCFF240CRZ.bed bed (peaks); assembly: hg19 peaks hg19 772.3 KB link
ENCFF363FKB ENCFF363FKB.bed bed (peaks); assembly: hg19 peaks hg19 16.0 KB link
ENCFF467LHB ENCFF467LHB.bed bed (peaks); assembly: hg19 peaks hg19 627.1 KB link
ENCFF806BND ENCFF806BND.bed bed (peaks); assembly: hg19 peaks hg19 356.5 KB link
ENCFF898QZA ENCFF898QZA.bed bed (peaks); assembly: hg19 peaks hg19 289.5 KB link
ENCFF501DYC ENCFF501DYC.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF513RST ENCFF513RST.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 258.5 KB link
ENCFF780LKE ENCFF780LKE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.3 MB link
ENCFF878CHN ENCFF878CHN.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 291.5 KB link
ENCFF103UKJ ENCFF103UKJ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 643.1 KB link
ENCFF333OBK ENCFF333OBK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 745.5 KB link
ENCFF409XTN ENCFF409XTN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF437YRG ENCFF437YRG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF702HCG ENCFF702HCG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF094MHA ENCFF094MHA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 12.2 MB link
ENCFF121YJC ENCFF121YJC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 8.3 MB link
ENCFF552DLY ENCFF552DLY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 8.6 MB link
ENCFF792BRM ENCFF792BRM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 12.5 MB link
ENCFF494UNP ENCFF494UNP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 9.6 MB link
ENCFF708WRS ENCFF708WRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 8.5 MB link
ENCFF482OIF ENCFF482OIF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 12.9 MB link
ENCFF692DGH ENCFF692DGH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 8.8 MB link
ENCFF010GZO ENCFF010GZO.fastq fastq (reads) reads 313.9 MB link
ENCFF498FKK ENCFF498FKK.fastq fastq (reads) reads 340.5 MB link
ENCFF803FES ENCFF803FES.fastq fastq (reads) reads 319.2 MB link
ENCFF973PMP ENCFF973PMP.fastq fastq (reads) reads 360.5 MB link