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ENCSR194HZU

ENCSR ENCODE
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eCLIP experiment on HepG2 against NOLC1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR278BZH

Summary

eCLIP of NOLC1 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against NOLC1

Analysis

View Data Processing
Analysis page is available for ENCSR194HZU.

Dataset Citations (2)

A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.0 GB
Assay: eCLIP
Target: NOLC1
Biosample: Homo sapiens HepG2
Files: 29
Unique ENC file IDs: 29
File Formats
bed (9) bigWig (8) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (13) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020

Data Files (29)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF329FPZ ENCFF329FPZ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 132.6 MB link
ENCFF405PYI ENCFF405PYI.bam bam (alignments); assembly: GRCh38 alignments GRCh38 175.3 MB link
ENCFF102DLV ENCFF102DLV.bam bam (alignments); assembly: hg19 alignments hg19 184.4 MB link
ENCFF840HYK ENCFF840HYK.bam bam (alignments); assembly: hg19 alignments hg19 58.4 MB link
ENCFF137YFD ENCFF137YFD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 33.1 KB link
ENCFF560WXZ ENCFF560WXZ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 586.3 KB link
ENCFF645PLG ENCFF645PLG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 411.4 KB link
ENCFF875VXN ENCFF875VXN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 148.8 KB link
ENCFF127EDI ENCFF127EDI.bed bed (peaks); assembly: hg19 peaks hg19 179.8 KB link
ENCFF633BUL ENCFF633BUL.bed bed (peaks); assembly: hg19 peaks hg19 605.5 KB link
ENCFF913QWS ENCFF913QWS.bed bed (peaks); assembly: hg19 peaks hg19 187.7 KB link
ENCFF944ISN ENCFF944ISN.bed bed (peaks); assembly: hg19 peaks hg19 27.3 KB link
ENCFF984VKQ ENCFF984VKQ.bed bed (peaks); assembly: hg19 peaks hg19 419.8 KB link
ENCFF297FNV ENCFF297FNV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 905.5 KB link
ENCFF844FIQ ENCFF844FIQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.3 MB link
ENCFF041WQX ENCFF041WQX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 469.4 KB link
ENCFF845UMK ENCFF845UMK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF583EBP ENCFF583EBP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.2 MB link
ENCFF805JFN ENCFF805JFN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.0 MB link
ENCFF253RLM ENCFF253RLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.2 MB link
ENCFF688RLF ENCFF688RLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 2.4 MB link
ENCFF087PHE ENCFF087PHE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.1 MB link
ENCFF771XSZ ENCFF771XSZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 4.3 MB link
ENCFF414HCO ENCFF414HCO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 2.4 MB link
ENCFF688VND ENCFF688VND.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.3 MB link
ENCFF091OGJ ENCFF091OGJ.fastq fastq (reads) reads 649.4 MB link
ENCFF161CIM ENCFF161CIM.fastq fastq (reads) reads 675.7 MB link
ENCFF537BAJ ENCFF537BAJ.fastq fastq (reads) reads 610.6 MB link
ENCFF656UJI ENCFF656UJI.fastq fastq (reads) reads 583.3 MB link