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ENCSR921SXC

ENCSR ENCODE
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eCLIP experiment on HepG2 against XPO5

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR583KVR

Summary

eCLIP of XPO5 in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against XPO5

Analysis

View Data Processing
Analysis page is available for ENCSR921SXC.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 3.7 GB
Assay: eCLIP
Target: XPO5
Biosample: Homo sapiens HepG2
Files: 34
Unique ENC file IDs: 34
File Formats
bed (10) bigBed (8) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (18) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (34)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF207XKP ENCFF207XKP.bam bam (alignments); assembly: GRCh38 alignments GRCh38 285.8 MB link
ENCFF764UJQ ENCFF764UJQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 248.8 MB link
ENCFF581UJN ENCFF581UJN.bam bam (alignments); assembly: hg19 alignments hg19 295.2 MB link
ENCFF679AXS ENCFF679AXS.bam bam (alignments); assembly: hg19 alignments hg19 259.9 MB link
ENCFF327VCE ENCFF327VCE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 96.6 KB link
ENCFF519KSH ENCFF519KSH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 202.3 KB link
ENCFF801OMV ENCFF801OMV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.4 MB link
ENCFF837ZQD ENCFF837ZQD.bed bed (peaks); assembly: GRCh38 peaks GRCh38 195.2 KB link
ENCFF957KNE ENCFF957KNE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF028MVM ENCFF028MVM.bed bed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF332IWJ ENCFF332IWJ.bed bed (peaks); assembly: hg19 peaks hg19 532.2 KB link
ENCFF440FET ENCFF440FET.bed bed (peaks); assembly: hg19 peaks hg19 99.6 KB link
ENCFF756YND ENCFF756YND.bed bed (peaks); assembly: hg19 peaks hg19 1.5 MB link
ENCFF804WBU ENCFF804WBU.bed bed (peaks); assembly: hg19 peaks hg19 545.3 KB link
ENCFF112VQE ENCFF112VQE.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.1 MB link
ENCFF445HUX ENCFF445HUX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 498.0 KB link
ENCFF774XBL ENCFF774XBL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.9 MB link
ENCFF805XCR ENCFF805XCR.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 490.6 KB link
ENCFF032ESQ ENCFF032ESQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.1 MB link
ENCFF361YBA ENCFF361YBA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.0 MB link
ENCFF430YLB ENCFF430YLB.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.0 MB link
ENCFF694HBX ENCFF694HBX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.9 MB link
ENCFF637FLJ ENCFF637FLJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 14.2 MB link
ENCFF902TPE ENCFF902TPE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 13.5 MB link
ENCFF927ZQS ENCFF927ZQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 13.9 MB link
ENCFF979NID ENCFF979NID.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 14.6 MB link
ENCFF397OKO ENCFF397OKO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 13.8 MB link
ENCFF930GWN ENCFF930GWN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 14.9 MB link
ENCFF487LYC ENCFF487LYC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 14.2 MB link
ENCFF647KPG ENCFF647KPG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 15.2 MB link
ENCFF039NQM ENCFF039NQM.fastq fastq (reads) reads 673.6 MB link
ENCFF172XZS ENCFF172XZS.fastq fastq (reads) reads 604.5 MB link
ENCFF865ZYB ENCFF865ZYB.fastq fastq (reads) reads 692.3 MB link
ENCFF989AWZ ENCFF989AWZ.fastq fastq (reads) reads 618.0 MB link