← All datasets

ENCSR206RXT

ENCSR ENCODE
Export SRA CSV View on ENCODE

eCLIP experiment on K562 against AKAP8L

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR550SGC

Summary

eCLIP of AKAP8L in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against AKAP8L

Analysis

View Data Processing
Analysis page is available for ENCSR206RXT.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 4.1 GB
Assay: eCLIP
Target: AKAP8L
Biosample: Homo sapiens K562
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF143KCR ENCFF143KCR.bam bam (alignments); assembly: GRCh38 alignments GRCh38 277.6 MB link
ENCFF941SIX ENCFF941SIX.bam bam (alignments); assembly: GRCh38 alignments GRCh38 407.4 MB link
ENCFF127ULN ENCFF127ULN.bam bam (alignments); assembly: hg19 alignments hg19 288.9 MB link
ENCFF977DLI ENCFF977DLI.bam bam (alignments); assembly: hg19 alignments hg19 425.5 MB link
ENCFF071DWM ENCFF071DWM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.4 MB link
ENCFF078MTW ENCFF078MTW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 184.9 KB link
ENCFF091OYS ENCFF091OYS.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.0 MB link
ENCFF205UTG ENCFF205UTG.bed bed (peaks); assembly: GRCh38 peaks GRCh38 47.5 KB link
ENCFF213IET ENCFF213IET.bed bed (peaks); assembly: GRCh38 peaks GRCh38 194.7 KB link
ENCFF136DYC ENCFF136DYC.bed bed (peaks); assembly: hg19 peaks hg19 570.4 KB link
ENCFF189LGT ENCFF189LGT.bed bed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF351YUV ENCFF351YUV.bed bed (peaks); assembly: hg19 peaks hg19 576.7 KB link
ENCFF781FPH ENCFF781FPH.bed bed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF923ZLX ENCFF923ZLX.bed bed (peaks); assembly: hg19 peaks hg19 45.2 KB link
ENCFF039TMU ENCFF039TMU.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 471.1 KB link
ENCFF057QQP ENCFF057QQP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 445.5 KB link
ENCFF150FZT ENCFF150FZT.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.0 MB link
ENCFF763JQU ENCFF763JQU.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.8 MB link
ENCFF201QGX ENCFF201QGX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.1 MB link
ENCFF202ILW ENCFF202ILW.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF490GRS ENCFF490GRS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF577SYV ENCFF577SYV.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF670RQS ENCFF670RQS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF922LHG ENCFF922LHG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF259BMC ENCFF259BMC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 20.5 MB link
ENCFF778ETC ENCFF778ETC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 15.8 MB link
ENCFF245JZB ENCFF245JZB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 16.4 MB link
ENCFF642ESE ENCFF642ESE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 21.1 MB link
ENCFF143UZI ENCFF143UZI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 16.3 MB link
ENCFF580SQQ ENCFF580SQQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 21.3 MB link
ENCFF178TIK ENCFF178TIK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 17.0 MB link
ENCFF609AFL ENCFF609AFL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 21.9 MB link
ENCFF228RUA ENCFF228RUA.fastq fastq (reads) reads 488.3 MB link
ENCFF368HXQ ENCFF368HXQ.fastq fastq (reads) reads 480.9 MB link
ENCFF443KRX ENCFF443KRX.fastq fastq (reads) reads 839.4 MB link
ENCFF941NZR ENCFF941NZR.fastq fastq (reads) reads 822.4 MB link