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ENCSR907GUB

ENCSR ENCODE
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eCLIP experiment on HepG2 against ZC3H11A

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR098VKQ

Summary

eCLIP of ZC3H11A in Homo sapiens HepG2

Overall Design

eCLIP experiment on HepG2 against ZC3H11A

Analysis

View Data Processing
Analysis page is available for ENCSR907GUB.

Dataset Citations (2)

A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 5.4 GB
Assay: eCLIP
Target: ZC3H11A
Biosample: Homo sapiens HepG2
Files: 30
Unique ENC file IDs: 30
File Formats
bed (8) bigWig (8) bigBed (6) bam (4) fastq (4)
Output types (5)
peaks (14) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020

Data Files (30)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF023GYY ENCFF023GYY.bam bam (alignments); assembly: GRCh38 alignments GRCh38 636.9 MB link
ENCFF904WAE ENCFF904WAE.bam bam (alignments); assembly: GRCh38 alignments GRCh38 570.4 MB link
ENCFF225LEZ ENCFF225LEZ.bam bam (alignments); assembly: hg19 alignments hg19 663.8 MB link
ENCFF784LBV ENCFF784LBV.bam bam (alignments); assembly: hg19 alignments hg19 589.0 MB link
ENCFF361GRY ENCFF361GRY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.0 MB link
ENCFF592WIH ENCFF592WIH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 25.4 KB link
ENCFF616NRU ENCFF616NRU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.1 MB link
ENCFF055TAZ ENCFF055TAZ.bed bed (peaks); assembly: hg19 peaks hg19 25.5 KB link
ENCFF058BHE ENCFF058BHE.bed bed (peaks); assembly: hg19 peaks hg19 3.0 MB link
ENCFF141VGU ENCFF141VGU.bed bed (peaks); assembly: hg19 peaks hg19 3.1 MB link
ENCFF260RXC ENCFF260RXC.bed bed (peaks); assembly: hg19 peaks hg19 712.5 KB link
ENCFF587DYP ENCFF587DYP.bed bed (peaks); assembly: hg19 peaks hg19 670.9 KB link
ENCFF064EVY ENCFF064EVY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.9 MB link
ENCFF427HEM ENCFF427HEM.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.7 MB link
ENCFF054SDW ENCFF054SDW.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF097XMF ENCFF097XMF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF309MWT ENCFF309MWT.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.9 MB link
ENCFF488BII ENCFF488BII.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.7 MB link
ENCFF137HKN ENCFF137HKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 28.8 MB link
ENCFF959OIY ENCFF959OIY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 32.1 MB link
ENCFF454CLN ENCFF454CLN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 33.4 MB link
ENCFF963VRZ ENCFF963VRZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 29.4 MB link
ENCFF581ZSJ ENCFF581ZSJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 32.6 MB link
ENCFF973WCF ENCFF973WCF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 28.9 MB link
ENCFF739NMD ENCFF739NMD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 30.0 MB link
ENCFF937ZFS ENCFF937ZFS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 33.5 MB link
ENCFF058CEF ENCFF058CEF.fastq fastq (reads) reads 709.0 MB link
ENCFF458RXV ENCFF458RXV.fastq fastq (reads) reads 715.0 MB link
ENCFF481WSB ENCFF481WSB.fastq fastq (reads) reads 668.5 MB link
ENCFF824KNR ENCFF824KNR.fastq fastq (reads) reads 666.4 MB link