← All datasets

ENCSR712IAG

ENCSR ENCODE
Export SRA CSV View on ENCODE

eCLIP experiment on K562 against ZC3H11A

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR321GBR

Summary

eCLIP of ZC3H11A in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against ZC3H11A

Analysis

View Data Processing
Analysis page is available for ENCSR712IAG.

Dataset Citations (2)

A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 3.3 GB
Assay: eCLIP
Target: ZC3H11A
Biosample: Homo sapiens K562
Files: 30
Unique ENC file IDs: 30
File Formats
bed (8) bigWig (8) bigBed (6) bam (4) fastq (4)
Output types (5)
peaks (14) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020

Data Files (30)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF709BYW ENCFF709BYW.bam bam (alignments); assembly: GRCh38 alignments GRCh38 120.6 MB link
ENCFF715RSI ENCFF715RSI.bam bam (alignments); assembly: GRCh38 alignments GRCh38 270.5 MB link
ENCFF116JFD ENCFF116JFD.bam bam (alignments); assembly: hg19 alignments hg19 126.6 MB link
ENCFF462QFK ENCFF462QFK.bam bam (alignments); assembly: hg19 alignments hg19 280.8 MB link
ENCFF258HOX ENCFF258HOX.bed bed (peaks); assembly: GRCh38 peaks GRCh38 27.3 KB link
ENCFF288IBH ENCFF288IBH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 954.9 KB link
ENCFF421XUC ENCFF421XUC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.5 MB link
ENCFF002MQE ENCFF002MQE.bed bed (peaks); assembly: hg19 peaks hg19 671.7 KB link
ENCFF310KBC ENCFF310KBC.bed bed (peaks); assembly: hg19 peaks hg19 1.5 MB link
ENCFF327WXM ENCFF327WXM.bed bed (peaks); assembly: hg19 peaks hg19 28.3 KB link
ENCFF926QBJ ENCFF926QBJ.bed bed (peaks); assembly: hg19 peaks hg19 628.5 KB link
ENCFF929BZH ENCFF929BZH.bed bed (peaks); assembly: hg19 peaks hg19 991.4 KB link
ENCFF601AWS ENCFF601AWS.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.1 MB link
ENCFF733HXI ENCFF733HXI.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.7 MB link
ENCFF176BVT ENCFF176BVT.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF179UOO ENCFF179UOO.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.7 MB link
ENCFF368SQA ENCFF368SQA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.4 MB link
ENCFF771HEF ENCFF771HEF.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.1 MB link
ENCFF716ISC ENCFF716ISC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.7 MB link
ENCFF849BHF ENCFF849BHF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 14.7 MB link
ENCFF251XJT ENCFF251XJT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.9 MB link
ENCFF998VWX ENCFF998VWX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 15.1 MB link
ENCFF183AXJ ENCFF183AXJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 15.2 MB link
ENCFF773UBK ENCFF773UBK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.0 MB link
ENCFF275YSU ENCFF275YSU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 15.6 MB link
ENCFF460TUE ENCFF460TUE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.2 MB link
ENCFF378WQX ENCFF378WQX.fastq fastq (reads) reads 748.3 MB link
ENCFF696WFR ENCFF696WFR.fastq fastq (reads) reads 496.5 MB link
ENCFF730ZZF ENCFF730ZZF.fastq fastq (reads) reads 538.3 MB link
ENCFF735ZUW ENCFF735ZUW.fastq fastq (reads) reads 683.7 MB link