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ENCSR006OEQ

ENCSR ENCODE
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eCLIP experiment on K562 against FAM120A

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR811FFO

Summary

eCLIP of FAM120A in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against FAM120A

Analysis

View Data Processing
Analysis page is available for ENCSR006OEQ.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 2.7 GB
Assay: eCLIP
Target: FAM120A
Biosample: Homo sapiens K562
Files: 35
Unique ENC file IDs: 35
File Formats
bed (10) bigBed (9) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (19) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (35)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF184QYU ENCFF184QYU.bam bam (alignments); assembly: GRCh38 alignments GRCh38 170.9 MB link
ENCFF499ZKI ENCFF499ZKI.bam bam (alignments); assembly: GRCh38 alignments GRCh38 388.3 MB link
ENCFF225RJI ENCFF225RJI.bam bam (alignments); assembly: hg19 alignments hg19 166.7 MB link
ENCFF668AFD ENCFF668AFD.bam bam (alignments); assembly: hg19 alignments hg19 391.9 MB link
ENCFF016RWW ENCFF016RWW.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF158AOV ENCFF158AOV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 135.6 KB link
ENCFF188HFB ENCFF188HFB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 946.1 KB link
ENCFF274QOR ENCFF274QOR.bed bed (peaks); assembly: GRCh38 peaks GRCh38 391.4 KB link
ENCFF316AVY ENCFF316AVY.bed bed (peaks); assembly: GRCh38 peaks GRCh38 287.3 KB link
ENCFF080JDD ENCFF080JDD.bed bed (peaks); assembly: hg19 peaks hg19 668.6 KB link
ENCFF150KMB ENCFF150KMB.bed bed (peaks); assembly: hg19 peaks hg19 913.1 KB link
ENCFF368MXJ ENCFF368MXJ.bed bed (peaks); assembly: hg19 peaks hg19 131.6 KB link
ENCFF493YGV ENCFF493YGV.bed bed (peaks); assembly: hg19 peaks hg19 940.1 KB link
ENCFF901AAL ENCFF901AAL.bed bed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF116XFB ENCFF116XFB.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 3.0 MB link
ENCFF248TVU ENCFF248TVU.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 671.6 KB link
ENCFF976BSP ENCFF976BSP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 963.9 KB link
ENCFF984DLZ ENCFF984DLZ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.9 MB link
ENCFF220URC ENCFF220URC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF453EIG ENCFF453EIG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.1 MB link
ENCFF611WPA ENCFF611WPA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF900RQG ENCFF900RQG.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF973OEK ENCFF973OEK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 3.0 MB link
ENCFF170VKG ENCFF170VKG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 11.7 MB link
ENCFF353KNB ENCFF353KNB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 20.0 MB link
ENCFF161DFB ENCFF161DFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 20.1 MB link
ENCFF318HXI ENCFF318HXI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.4 MB link
ENCFF086NQQ ENCFF086NQQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 20.9 MB link
ENCFF379MQJ ENCFF379MQJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 12.2 MB link
ENCFF144SGR ENCFF144SGR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 12.0 MB link
ENCFF905XHS ENCFF905XHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 21.1 MB link
ENCFF094VBR ENCFF094VBR.fastq fastq (reads) reads 355.0 MB link
ENCFF352HXC ENCFF352HXC.fastq fastq (reads) reads 318.7 MB link
ENCFF820TME ENCFF820TME.fastq fastq (reads) reads 418.9 MB link
ENCFF874PCG ENCFF874PCG.fastq fastq (reads) reads 374.3 MB link