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ENCSR197INS

ENCSR ENCODE
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eCLIP experiment on K562 against PPIL4

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR346IHS

Summary

eCLIP of PPIL4 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against PPIL4

Analysis

View Data Processing
Analysis page is available for ENCSR197INS.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 4.2 GB
Assay: eCLIP
Target: PPIL4
Biosample: Homo sapiens K562
Files: 35
Unique ENC file IDs: 35
File Formats
bed (10) bigBed (9) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (19) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (35)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF648KRQ ENCFF648KRQ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 549.2 MB link
ENCFF823SYP ENCFF823SYP.bam bam (alignments); assembly: GRCh38 alignments GRCh38 425.7 MB link
ENCFF194KZE ENCFF194KZE.bam bam (alignments); assembly: hg19 alignments hg19 567.2 MB link
ENCFF601IBB ENCFF601IBB.bam bam (alignments); assembly: hg19 alignments hg19 439.0 MB link
ENCFF220VDV ENCFF220VDV.bed bed (peaks); assembly: GRCh38 peaks GRCh38 2.3 MB link
ENCFF559HGK ENCFF559HGK.bed bed (peaks); assembly: GRCh38 peaks GRCh38 14.0 KB link
ENCFF669UKN ENCFF669UKN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 145.9 KB link
ENCFF777KZL ENCFF777KZL.bed bed (peaks); assembly: GRCh38 peaks GRCh38 212.0 KB link
ENCFF987VIP ENCFF987VIP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 1.8 MB link
ENCFF036ZXE ENCFF036ZXE.bed bed (peaks); assembly: hg19 peaks hg19 2.3 MB link
ENCFF188XKC ENCFF188XKC.bed bed (peaks); assembly: hg19 peaks hg19 1.8 MB link
ENCFF364OUY ENCFF364OUY.bed bed (peaks); assembly: hg19 peaks hg19 463.7 KB link
ENCFF546EKR ENCFF546EKR.bed bed (peaks); assembly: hg19 peaks hg19 13.6 KB link
ENCFF646OBY ENCFF646OBY.bed bed (peaks); assembly: hg19 peaks hg19 660.7 KB link
ENCFF004RVX ENCFF004RVX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 382.7 KB link
ENCFF178WNA ENCFF178WNA.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 2.8 MB link
ENCFF410EMT ENCFF410EMT.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 4.4 MB link
ENCFF531JAB ENCFF531JAB.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 491.4 KB link
ENCFF028OXA ENCFF028OXA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 4.4 MB link
ENCFF440PMK ENCFF440PMK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF486WMD ENCFF486WMD.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.4 MB link
ENCFF507MHJ ENCFF507MHJ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 895.6 KB link
ENCFF727EPC ENCFF727EPC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.8 MB link
ENCFF366XQT ENCFF366XQT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 21.2 MB link
ENCFF605SJT ENCFF605SJT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 25.8 MB link
ENCFF659VVA ENCFF659VVA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 26.3 MB link
ENCFF926PKF ENCFF926PKF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 21.6 MB link
ENCFF179UGN ENCFF179UGN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 21.9 MB link
ENCFF277LUS ENCFF277LUS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 26.5 MB link
ENCFF326MGP ENCFF326MGP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 27.1 MB link
ENCFF387QWV ENCFF387QWV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 22.3 MB link
ENCFF045ANJ ENCFF045ANJ.fastq fastq (reads) reads 586.8 MB link
ENCFF234LRU ENCFF234LRU.fastq fastq (reads) reads 442.8 MB link
ENCFF427FOO ENCFF427FOO.fastq fastq (reads) reads 599.4 MB link
ENCFF854FTL ENCFF854FTL.fastq fastq (reads) reads 452.2 MB link