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ENCSR057DWB

ENCSR ENCODE
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eCLIP experiment on K562 against TIA1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR356GCJ

Summary

eCLIP of TIA1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against TIA1

Analysis

View Data Processing
Analysis page is available for ENCSR057DWB.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 6.5 GB
Assay: eCLIP
Target: TIA1
Biosample: Homo sapiens K562
Files: 38
Unique ENC file IDs: 38
File Formats
bed (12) bigBed (8) bigWig (8) bam (6) fastq (4)
Output types (5)
peaks (20) alignments (6) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (38)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF080VML ENCFF080VML.bam bam (alignments); assembly: GRCh38 alignments GRCh38 564.1 MB link
ENCFF581EBE ENCFF581EBE.bam bam (alignments); assembly: GRCh38 alignments GRCh38 672.5 MB link
ENCFF314LSF ENCFF314LSF.bam bam (alignments); assembly: hg19 alignments hg19 573.2 MB link
ENCFF319KAF ENCFF319KAF.bam bam (alignments); assembly: hg19 alignments hg19 682.7 MB link
ENCFF871ZLL ENCFF871ZLL.bam bam (alignments); assembly: hg19 alignments hg19 573.2 MB link
ENCFF900OHV ENCFF900OHV.bam bam (alignments); assembly: hg19 alignments hg19 682.7 MB link
ENCFF348TPU ENCFF348TPU.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.6 MB link
ENCFF459AMC ENCFF459AMC.bed bed (peaks); assembly: GRCh38 peaks GRCh38 389.3 KB link
ENCFF674TKN ENCFF674TKN.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.2 MB link
ENCFF827ZJE ENCFF827ZJE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 433.7 KB link
ENCFF918KMT ENCFF918KMT.bed bed (peaks); assembly: GRCh38 peaks GRCh38 128.0 KB link
ENCFF298ZAG ENCFF298ZAG.bed bed (peaks); assembly: hg19 peaks hg19 127.2 KB link
ENCFF331OSU ENCFF331OSU.bed bed (peaks); assembly: hg19 peaks hg19 1.0 MB link
ENCFF442UPB ENCFF442UPB.bed bed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF477IOM ENCFF477IOM.bed bed (peaks); assembly: hg19 peaks hg19 986.0 KB link
ENCFF509PKA ENCFF509PKA.bed bed (peaks); assembly: hg19 peaks hg19 3.2 MB link
ENCFF635GJU ENCFF635GJU.bed bed (peaks); assembly: hg19 peaks hg19 935.2 KB link
ENCFF673MNH ENCFF673MNH.bed bed (peaks); assembly: hg19 peaks hg19 3.6 MB link
ENCFF014QCP ENCFF014QCP.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 915.4 KB link
ENCFF031JPO ENCFF031JPO.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 6.6 MB link
ENCFF125CWQ ENCFF125CWQ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 5.9 MB link
ENCFF499XGJ ENCFF499XGJ.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 984.6 KB link
ENCFF202HXA ENCFF202HXA.bigBed bigBed (peaks); assembly: hg19 peaks hg19 5.9 MB link
ENCFF306GFY ENCFF306GFY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF399NDL ENCFF399NDL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 6.5 MB link
ENCFF769OYZ ENCFF769OYZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.1 MB link
ENCFF093IND ENCFF093IND.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 30.5 MB link
ENCFF873ZAY ENCFF873ZAY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 34.0 MB link
ENCFF017ZEM ENCFF017ZEM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 34.2 MB link
ENCFF794KQT ENCFF794KQT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 30.6 MB link
ENCFF782ZMF ENCFF782ZMF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 35.6 MB link
ENCFF940BFP ENCFF940BFP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 31.8 MB link
ENCFF248YBJ ENCFF248YBJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 32.1 MB link
ENCFF262IWZ ENCFF262IWZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 36.0 MB link
ENCFF604VPQ ENCFF604VPQ.fastq fastq (reads) reads 662.5 MB link
ENCFF710AFX ENCFF710AFX.fastq fastq (reads) reads 647.2 MB link
ENCFF820BWG ENCFF820BWG.fastq fastq (reads) reads 611.9 MB link
ENCFF893QVN ENCFF893QVN.fastq fastq (reads) reads 645.8 MB link