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ENCSR628IDK

ENCSR ENCODE
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eCLIP experiment on K562 against KHDRBS1

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR197NFH

Summary

eCLIP of KHDRBS1 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against KHDRBS1

Analysis

View Data Processing
Analysis page is available for ENCSR628IDK.

Dataset Citations (3)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
PubMed citation (PMID 32728046)

ENCODE Metadata

Total file size: 5.6 GB
Assay: eCLIP
Target: KHDRBS1
Biosample: Homo sapiens K562
Files: 38
Unique ENC file IDs: 38
File Formats
bed (12) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (22) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (38)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF778POI ENCFF778POI.bam bam (alignments); assembly: GRCh38 alignments GRCh38 842.3 MB link
ENCFF787ROO ENCFF787ROO.bam bam (alignments); assembly: GRCh38 alignments GRCh38 759.8 MB link
ENCFF352QTY ENCFF352QTY.bam bam (alignments); assembly: hg19 alignments hg19 859.3 MB link
ENCFF608WLW ENCFF608WLW.bam bam (alignments); assembly: hg19 alignments hg19 776.7 MB link
ENCFF027UTH ENCFF027UTH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 26.0 KB link
ENCFF214SWT ENCFF214SWT.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.7 MB link
ENCFF308KNI ENCFF308KNI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 185.3 KB link
ENCFF406JXO ENCFF406JXO.bed bed (peaks); assembly: GRCh38 peaks GRCh38 208.9 KB link
ENCFF738QUP ENCFF738QUP.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.4 MB link
ENCFF052ABQ ENCFF052ABQ.bed bed (peaks); assembly: hg19 peaks hg19 3.7 MB link
ENCFF090VQN ENCFF090VQN.bed bed (peaks); assembly: hg19 peaks hg19 493.0 KB link
ENCFF124YKO ENCFF124YKO.bed bed (peaks); assembly: hg19 peaks hg19 26.5 KB link
ENCFF335DOX ENCFF335DOX.bed bed (peaks); assembly: hg19 peaks hg19 493.1 KB link
ENCFF390ANM ENCFF390ANM.bed bed (peaks); assembly: hg19 peaks hg19 3.4 MB link
ENCFF564WBK ENCFF564WBK.bed bed (peaks); assembly: hg19 peaks hg19 541.5 KB link
ENCFF854ZHW ENCFF854ZHW.bed bed (peaks); assembly: hg19 peaks hg19 541.3 KB link
ENCFF104SYR ENCFF104SYR.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 566.9 KB link
ENCFF154ZDF ENCFF154ZDF.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 456.2 KB link
ENCFF388PCV ENCFF388PCV.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 6.5 MB link
ENCFF610VBL ENCFF610VBL.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 6.1 MB link
ENCFF050ONU ENCFF050ONU.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF164NCN ENCFF164NCN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 6.1 MB link
ENCFF228IEH ENCFF228IEH.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.9 MB link
ENCFF733UTQ ENCFF733UTQ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 961.4 KB link
ENCFF862UDL ENCFF862UDL.bigBed bigBed (peaks); assembly: hg19 peaks hg19 6.5 MB link
ENCFF923QOM ENCFF923QOM.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.9 MB link
ENCFF134SUE ENCFF134SUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 37.7 MB link
ENCFF141IVW ENCFF141IVW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 40.4 MB link
ENCFF381KMI ENCFF381KMI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 41.1 MB link
ENCFF412OIS ENCFF412OIS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 38.4 MB link
ENCFF577PBB ENCFF577PBB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 38.6 MB link
ENCFF707HNB ENCFF707HNB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 40.8 MB link
ENCFF167NEJ ENCFF167NEJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 41.5 MB link
ENCFF603CPZ ENCFF603CPZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 39.3 MB link
ENCFF289UZZ ENCFF289UZZ.fastq fastq (reads) reads 590.9 MB link
ENCFF651RTO ENCFF651RTO.fastq fastq (reads) reads 506.4 MB link
ENCFF676NAG ENCFF676NAG.fastq fastq (reads) reads 569.2 MB link
ENCFF947CCD ENCFF947CCD.fastq fastq (reads) reads 487.0 MB link