CLIP-seq
Assay27
Publications
11
abstract
18
geo_metadata
5
keywords_mesh
Publications
Identification of RBP binding sites using RNA deaminases.
Methods in enzymology
(2025)
PMID:40250958
abstract
Transcriptome regulation by PARP13 in basal and antiviral states in human cells.
iScience
(2024)
PMID:38495826
geo_metadata
A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.
Nucleic acids research
(2024)
PMID:38554115
geo_metadata
ePRINT: exonuclease assisted mapping of protein-RNA interactions.
Genome biology
(2024)
PMID:38807229
geo_metadata
Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites.
Cell genomics
(2023)
PMID:37388912
geo_metadata
abstract
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology
(2020)
PMID:32252787
keywords_mesh
Suppression of Endothelial AGO1 Promotes Adipose Tissue Browning and Improves Metabolic Dysfunction.
Circulation
(2020)
PMID:32393053
geo_metadata
Large-scale tethered function assays identify factors that regulate mRNA stability and translation.
Nature structural & molecular biology
(2020)
PMID:32807991
geo_metadata
The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis.
Cell stem cell
(2019)
PMID:31588046
geo_metadata
Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.
Wiley interdisciplinary reviews. RNA
(2018)
PMID:28853213
abstract
CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.
Methods (San Diego, Calif.)
(2017)
PMID:28003131
keywords_mesh
Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
Methods in molecular biology (Clifton, N.J.)
(2017)
PMID:28766298
keywords_mesh
Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.
Methods (San Diego, Calif.)
(2017)
PMID:28790018
keywords_mesh
NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing.
Nature structural & molecular biology
(2017)
PMID:28846091
geo_metadata
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Nature methods
(2016)
PMID:27018577
abstract
geo_metadata
Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival.
Cell reports
(2016)
PMID:27068461
geo_metadata
abstract
Musashi-2 attenuates AHR signalling to expand human haematopoietic stem cells.
Nature
(2016)
PMID:27121842
geo_metadata
Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
Advances in experimental medicine and biology
(2016)
PMID:27256380
keywords_mesh
Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses.
Nature communications
(2016)
PMID:27378374
abstract
geo_metadata
Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.
Molecular cell
(2015)
PMID:26253027
geo_metadata
Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing.
Molecular cell
(2013)
PMID:23562324
geo_metadata
abstract
High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection.
Journal of virology
(2012)
PMID:22013051
geo_metadata
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins.
Cell reports
(2012)
PMID:22574288
abstract
geo_metadata
LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.
Molecular cell
(2012)
PMID:22959275
geo_metadata
abstract
Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs.
Nature neuroscience
(2012)
PMID:23023293
geo_metadata
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.
Nature structural & molecular biology
(2010)
PMID:20062054
abstract
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells.
Nature structural & molecular biology
(2009)
PMID:19136955
abstract