Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.
Molecular cell
· 2017
· Vol. 67
(1)
· pp. 148-161.e5
Abstract
Alternative splicing (AS) generates isoform diversity for cellular identity and homeostasis in multicellular life. Although AS variation has been observed among single cells, little is known about the biological or evolutionary significance of such variation. We developed Expedition, a computational framework consisting of outrigger, a de novo splice graph transversal algorithm to detect AS; anchor, a Bayesian approach to assign modalities; and bonvoyage, a visualization tool using non-negative matrix factorization to display modality changes. Applying Expedition to single pluripotent stem cells undergoing neuronal differentiation, we discover that up to 20% of AS exons exhibit bimodality. Bimodal exons are flanked by more conserved intronic sequences harboring distinct cis-regulatory motifs, constitute much of cell-type-specific splicing, are highly dynamic during cellular transitions, preserve reading frame, and reveal intricacy of cell states invisible to conventional gene expression analysis. Systematic AS characterization in single cells redefines our understanding of AS complexity in cell biology.
Publication Types
["Journal Article"]
MeSH Terms
["Algorithms", "Alternative Splicing", "Bayes Theorem", "Cell Line", "Computer Simulation", "Evolution, Molecular", "Gene Expression Regulation, Developmental", "Humans", "Kinetics", "Male", "Models, Genetic", "Nerve Tissue Proteins", "Neural Stem Cells", "Neurogenesis", "Neurons", "Phenotype", "Pluripotent Stem Cells", "RNA, Messenger", "Single-Cell Analysis"]
Funding
R01 HG004659
NHGRI NIH HHS
(United States)
P30 NS047101
NINDS NIH HHS
(United States)
U19 MH107367
NIMH NIH HHS
(United States)
R01 AI123202
NIAID NIH HHS
(United States)
R01 HD085902
NICHD NIH HHS
(United States)
R01 NS075449
NINDS NIH HHS
(United States)
R01 AI095277
NIAID NIH HHS
(United States)
Linked Datasets (1)
Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation
Homo sapiens428 data files
| File | Type | Size |
|---|---|---|
| CVN_01_R1.fastq.gz | RNA-Seq | 800.1 MB |
| CVN_01_R1.fastq.gz | RNA-Seq | 800.1 MB |
| CVN_02_R1.fastq.gz | RNA-Seq | 900.0 MB |
| CVN_02_R1.fastq.gz | RNA-Seq | 900.0 MB |
| CVN_03_R1.fastq.gz | RNA-Seq | 894.4 MB |
| CVN_03_R1.fastq.gz | RNA-Seq | 894.4 MB |
| CVN_04_R1.fastq.gz | RNA-Seq | 843.7 MB |
| CVN_04_R1.fastq.gz | RNA-Seq | 843.7 MB |
| CVN_05_R1.fastq.gz | RNA-Seq | 933.1 MB |
| CVN_05_R1.fastq.gz | RNA-Seq | 933.1 MB |
| CVN_06_R1.fastq.gz | RNA-Seq | 911.1 MB |
| CVN_06_R1.fastq.gz | RNA-Seq | 911.1 MB |
| CVN_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_08_R1.fastq.gz | RNA-Seq | 995.8 MB |
| CVN_08_R1.fastq.gz | RNA-Seq | 995.8 MB |
| CVN_09_R1.fastq.gz | RNA-Seq | 753.2 MB |
| CVN_09_R1.fastq.gz | RNA-Seq | 753.2 MB |
| CVN_11_R1.fastq.gz | RNA-Seq | 955.0 MB |
| CVN_11_R1.fastq.gz | RNA-Seq | 955.0 MB |
| CVN_12_R1.fastq.gz | RNA-Seq | 1018.6 MB |
| CVN_12_R1.fastq.gz | RNA-Seq | 1018.6 MB |
| CVN_13_R1.fastq.gz | RNA-Seq | 882.5 MB |
| CVN_13_R1.fastq.gz | RNA-Seq | 882.5 MB |
| CVN_14_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_14_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_15_R1.fastq.gz | RNA-Seq | 864.3 MB |
| CVN_15_R1.fastq.gz | RNA-Seq | 864.3 MB |
| CVN_16_R1.fastq.gz | RNA-Seq | 841.8 MB |
| CVN_16_R1.fastq.gz | RNA-Seq | 841.8 MB |
| CVN_17_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_17_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_18_R1.fastq.gz | RNA-Seq | 602.5 MB |
| CVN_18_R1.fastq.gz | RNA-Seq | 602.5 MB |
| CVN_19_R1.fastq.gz | RNA-Seq | 719.5 MB |
| CVN_19_R1.fastq.gz | RNA-Seq | 719.5 MB |
| CVN_20_R1.fastq.gz | RNA-Seq | 649.6 MB |
| CVN_20_R1.fastq.gz | RNA-Seq | 649.6 MB |
| CVN_21_R1.fastq.gz | RNA-Seq | 776.2 MB |
| CVN_21_R1.fastq.gz | RNA-Seq | 776.2 MB |
| CVN_22_R1.fastq.gz | RNA-Seq | 657.0 MB |
| CVN_22_R1.fastq.gz | RNA-Seq | 657.0 MB |
| CVN_23_R1.fastq.gz | RNA-Seq | 633.2 MB |
| CVN_23_R1.fastq.gz | RNA-Seq | 633.2 MB |
| CVN_24_R1.fastq.gz | RNA-Seq | 701.9 MB |
| CVN_24_R1.fastq.gz | RNA-Seq | 701.9 MB |
| CVN_25_R1.fastq.gz | RNA-Seq | 614.8 MB |
| CVN_25_R1.fastq.gz | RNA-Seq | 614.8 MB |
| CVN_26_R1.fastq.gz | RNA-Seq | 681.1 MB |
| CVN_26_R1.fastq.gz | RNA-Seq | 681.1 MB |
| CVN_27_R1.fastq.gz | RNA-Seq | 607.9 MB |
| CVN_27_R1.fastq.gz | RNA-Seq | 607.9 MB |
| CVN_28_R1.fastq.gz | RNA-Seq | 672.4 MB |
| CVN_28_R1.fastq.gz | RNA-Seq | 672.4 MB |
| CVN_29_R1.fastq.gz | RNA-Seq | 708.1 MB |
| CVN_29_R1.fastq.gz | RNA-Seq | 708.1 MB |
| CVN_30_R1.fastq.gz | RNA-Seq | 811.2 MB |
| CVN_30_R1.fastq.gz | RNA-Seq | 811.2 MB |
| CVN_31_R1.fastq.gz | RNA-Seq | 962.1 MB |
| CVN_31_R1.fastq.gz | RNA-Seq | 962.1 MB |
| CVN_32_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_32_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_33_R1.fastq.gz | RNA-Seq | 931.3 MB |
| CVN_33_R1.fastq.gz | RNA-Seq | 931.3 MB |
| CVN_34_R1.fastq.gz | RNA-Seq | 399.2 MB |
| CVN_34_R1.fastq.gz | RNA-Seq | 399.2 MB |
| CVN_35_R1.fastq.gz | RNA-Seq | 1.3 GB |
| CVN_35_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_02_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_02_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_03_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_03_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_04_R1.fastq.gz | RNA-Seq | 1.0 GB |
| M1_04_R1.fastq.gz | RNA-Seq | 1.0 GB |
| M1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_07_R1.fastq.gz | RNA-Seq | 2.4 GB |
| M1_07_R1.fastq.gz | RNA-Seq | 2.4 GB |
| M1_08_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_08_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_10_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M1_10_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M1_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_12_R1.fastq.gz | RNA-Seq | 3.3 GB |
| M1_12_R1.fastq.gz | RNA-Seq | 3.3 GB |
| M2_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M2_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_04_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_04_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_05_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_05_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M2_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M2_07_R1.fastq.gz | RNA-Seq | 1.9 GB |
| M2_07_R1.fastq.gz | RNA-Seq | 1.9 GB |
| M2_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_10_R1.fastq.gz | RNA-Seq | 2.1 GB |
| M2_10_R1.fastq.gz | RNA-Seq | 2.1 GB |
| M2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| M2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| M2_12_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_12_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2nd_01_R1.fastq.gz | RNA-Seq | 227.2 MB |
| M2nd_01_R1.fastq.gz | RNA-Seq | 227.2 MB |
| M2nd_02_R1.fastq.gz | RNA-Seq | 512.8 MB |
| M2nd_02_R1.fastq.gz | RNA-Seq | 512.8 MB |
| M2nd_03_R1.fastq.gz | RNA-Seq | 597.1 MB |
| M2nd_03_R1.fastq.gz | RNA-Seq | 597.1 MB |
| M2nd_04_R1.fastq.gz | RNA-Seq | 419.9 MB |
| M2nd_04_R1.fastq.gz | RNA-Seq | 419.9 MB |
| M2nd_05_R1.fastq.gz | RNA-Seq | 448.2 MB |
| M2nd_05_R1.fastq.gz | RNA-Seq | 448.2 MB |
| M2nd_06_R1.fastq.gz | RNA-Seq | 704.5 MB |
| M2nd_06_R1.fastq.gz | RNA-Seq | 704.5 MB |
| M2nd_07_R1.fastq.gz | RNA-Seq | 873.9 MB |
| M2nd_07_R1.fastq.gz | RNA-Seq | 873.9 MB |
| M2nd_08_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_08_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_09_R1.fastq.gz | RNA-Seq | 174.9 MB |
| M2nd_09_R1.fastq.gz | RNA-Seq | 174.9 MB |
| M2nd_10_R1.fastq.gz | RNA-Seq | 357.9 MB |
| M2nd_10_R1.fastq.gz | RNA-Seq | 357.9 MB |
| M2nd_11_R1.fastq.gz | RNA-Seq | 331.4 MB |
| M2nd_11_R1.fastq.gz | RNA-Seq | 331.4 MB |
| M2nd_12_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_12_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_13_R1.fastq.gz | RNA-Seq | 3.6 GB |
| M2nd_13_R1.fastq.gz | RNA-Seq | 3.6 GB |
| M2nd_14_R1.fastq.gz | RNA-Seq | 541.3 MB |
| M2nd_14_R1.fastq.gz | RNA-Seq | 541.3 MB |
| M2nd_15_R1.fastq.gz | RNA-Seq | 466.3 MB |
| M2nd_15_R1.fastq.gz | RNA-Seq | 466.3 MB |
| M2nd_16_R1.fastq.gz | RNA-Seq | 421.6 MB |
| M2nd_16_R1.fastq.gz | RNA-Seq | 421.6 MB |
| M2nd_17_R1.fastq.gz | RNA-Seq | 232.6 MB |
| M2nd_17_R1.fastq.gz | RNA-Seq | 232.6 MB |
| M2nd_18_R1.fastq.gz | RNA-Seq | 519.8 MB |
| M2nd_18_R1.fastq.gz | RNA-Seq | 519.8 MB |
| M2nd_19_R1.fastq.gz | RNA-Seq | 337.5 MB |
| M2nd_19_R1.fastq.gz | RNA-Seq | 337.5 MB |
| M2nd_20_R1.fastq.gz | RNA-Seq | 440.5 MB |
| M2nd_20_R1.fastq.gz | RNA-Seq | 440.5 MB |
| M2nd_21_R1.fastq.gz | RNA-Seq | 3.5 GB |
| M2nd_21_R1.fastq.gz | RNA-Seq | 3.5 GB |
| M2nd_22_R1.fastq.gz | RNA-Seq | 624.8 MB |
| M2nd_22_R1.fastq.gz | RNA-Seq | 624.8 MB |
| M2nd_24_R1.fastq.gz | RNA-Seq | 296.1 MB |
| M2nd_24_R1.fastq.gz | RNA-Seq | 296.1 MB |
| M2nd_25_R1.fastq.gz | RNA-Seq | 288.6 MB |
| M2nd_25_R1.fastq.gz | RNA-Seq | 288.6 MB |
| M2nd_26_R1.fastq.gz | RNA-Seq | 316.2 MB |
| M2nd_26_R1.fastq.gz | RNA-Seq | 316.2 MB |
| M2nd_27_R1.fastq.gz | RNA-Seq | 162.4 MB |
| M2nd_27_R1.fastq.gz | RNA-Seq | 162.4 MB |
| M2nd_28_R1.fastq.gz | RNA-Seq | 214.9 MB |
| M2nd_28_R1.fastq.gz | RNA-Seq | 214.9 MB |
| M2nd_29_R1.fastq.gz | RNA-Seq | 262.3 MB |
| M2nd_29_R1.fastq.gz | RNA-Seq | 262.3 MB |
| M2nd_33_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_33_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_34_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M2nd_34_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M3_01_R1.fastq.gz | RNA-Seq | 990.4 MB |
| M3_01_R1.fastq.gz | RNA-Seq | 990.4 MB |
| M3_02_R1.fastq.gz | RNA-Seq | 2.0 GB |
| M3_02_R1.fastq.gz | RNA-Seq | 2.0 GB |
| M3_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M3_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M3_07_R1.fastq.gz | RNA-Seq | 964.3 MB |
| M3_07_R1.fastq.gz | RNA-Seq | 964.3 MB |
| M3_14_R1.fastq.gz | RNA-Seq | 715.8 MB |
| M3_14_R1.fastq.gz | RNA-Seq | 715.8 MB |
| M4_05_R1.fastq.gz | RNA-Seq | 1.2 GB |
| M4_05_R1.fastq.gz | RNA-Seq | 1.2 GB |
| M4_06_R1.fastq.gz | RNA-Seq | 522.7 MB |
| M4_06_R1.fastq.gz | RNA-Seq | 522.7 MB |
| M4_11_R1.fastq.gz | RNA-Seq | 535.8 MB |
| M4_11_R1.fastq.gz | RNA-Seq | 535.8 MB |
| M4_12_R1.fastq.gz | RNA-Seq | 544.1 MB |
| M4_12_R1.fastq.gz | RNA-Seq | 544.1 MB |
| M4_13_R1.fastq.gz | RNA-Seq | 962.7 MB |
| M4_13_R1.fastq.gz | RNA-Seq | 962.7 MB |
| M4_14_R1.fastq.gz | RNA-Seq | 628.1 MB |
| M4_14_R1.fastq.gz | RNA-Seq | 628.1 MB |
| M5_01_R1.fastq.gz | RNA-Seq | 2.8 GB |
| M5_01_R1.fastq.gz | RNA-Seq | 2.8 GB |
| M5_02_R1.fastq.gz | RNA-Seq | 4.2 GB |
| M5_02_R1.fastq.gz | RNA-Seq | 4.2 GB |
| M5_03_R1.fastq.gz | RNA-Seq | 4.1 GB |
| M5_03_R1.fastq.gz | RNA-Seq | 4.1 GB |
| M5_04_R1.fastq.gz | RNA-Seq | 3.7 GB |
| M5_04_R1.fastq.gz | RNA-Seq | 3.7 GB |
| M6_02_R1.fastq.gz | RNA-Seq | 6.0 GB |
| M6_02_R1.fastq.gz | RNA-Seq | 6.0 GB |
| M6_03_R1.fastq.gz | RNA-Seq | 13.9 GB |
| M6_03_R1.fastq.gz | RNA-Seq | 13.9 GB |
| M6_04_R1.fastq.gz | RNA-Seq | 10.9 GB |
| M6_04_R1.fastq.gz | RNA-Seq | 10.9 GB |
| M6_05_R1.fastq.gz | RNA-Seq | 11.3 GB |
| M6_05_R1.fastq.gz | RNA-Seq | 11.3 GB |
| M6_06_R1.fastq.gz | RNA-Seq | 11.8 GB |
| M6_06_R1.fastq.gz | RNA-Seq | 11.8 GB |
| M6_07_R1.fastq.gz | RNA-Seq | 12.8 GB |
| M6_07_R1.fastq.gz | RNA-Seq | 12.8 GB |
| N1_01_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_01_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N1_03_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_03_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N1_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N1_05_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_05_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_06_R1.fastq.gz | RNA-Seq | 963.1 MB |
| N1_06_R1.fastq.gz | RNA-Seq | 963.1 MB |
| N1_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N1_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N1_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N1_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N1_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N1_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N1_11_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N1_11_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N1_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N1_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N2_01_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_01_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_02_R1.fastq.gz | RNA-Seq | 2.5 GB |
| N2_02_R1.fastq.gz | RNA-Seq | 2.5 GB |
| N2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N2_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N2_05_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N2_05_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N2_06_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N2_06_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N2_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N2_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N2_08_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_08_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N2_10_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_10_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_12_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N2_12_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_01_R1.fastq.gz | RNA-Seq | 2.4 GB |
| N3_01_R1.fastq.gz | RNA-Seq | 2.4 GB |
| N3_02_R1.fastq.gz | RNA-Seq | 2.8 GB |
| N3_02_R1.fastq.gz | RNA-Seq | 2.8 GB |
| N3_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N3_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N3_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_06_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N3_06_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N3_07_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N3_07_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N3_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_10_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_10_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_11_R1.fastq.gz | RNA-Seq | 1.6 GB |
| N3_11_R1.fastq.gz | RNA-Seq | 1.6 GB |
| N3_12_R1.fastq.gz | RNA-Seq | 2.0 GB |
| N3_12_R1.fastq.gz | RNA-Seq | 2.0 GB |
| N4_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N4_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N4_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_09_R1.fastq.gz | RNA-Seq | 727.2 MB |
| N4_09_R1.fastq.gz | RNA-Seq | 727.2 MB |
| N4_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N4_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N5_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| N5_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| N5_10_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N5_10_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_01_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_01_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_03_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_03_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_04_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P1_04_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P1_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P1_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P1_08_R1.fastq.gz | RNA-Seq | 612.1 MB |
| P1_08_R1.fastq.gz | RNA-Seq | 612.1 MB |
| P1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P1_10_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_10_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P1_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P2_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_04_R1.fastq.gz | RNA-Seq | 2.3 GB |
| P2_04_R1.fastq.gz | RNA-Seq | 2.3 GB |
| P2_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_06_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P2_06_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P2_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_08_R1.fastq.gz | RNA-Seq | 947.8 MB |
| P2_08_R1.fastq.gz | RNA-Seq | 947.8 MB |
| P2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_10_R1.fastq.gz | RNA-Seq | 3.3 GB |
| P2_10_R1.fastq.gz | RNA-Seq | 3.3 GB |
| P2_11_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_11_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_12_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_12_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_13_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P2_13_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P2_14_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P2_14_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P3_01_R1.fastq.gz | RNA-Seq | 6.3 GB |
| P3_01_R1.fastq.gz | RNA-Seq | 6.3 GB |
| P3_02_R1.fastq.gz | RNA-Seq | 6.7 GB |
| P3_02_R1.fastq.gz | RNA-Seq | 6.7 GB |
| P3_03_R1.fastq.gz | RNA-Seq | 7.7 GB |
| P3_03_R1.fastq.gz | RNA-Seq | 7.7 GB |
| P4_01_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_01_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_06_R1.fastq.gz | RNA-Seq | 1.0 GB |
| P4_06_R1.fastq.gz | RNA-Seq | 1.0 GB |
| P4_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| P4_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| P4_08_R1.fastq.gz | RNA-Seq | 896.8 MB |
| P4_08_R1.fastq.gz | RNA-Seq | 896.8 MB |
| P4_09_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P4_09_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P4_10_R1.fastq.gz | RNA-Seq | 2.5 GB |
| P4_10_R1.fastq.gz | RNA-Seq | 2.5 GB |
| P4_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P4_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P6_01_R1.fastq.gz | RNA-Seq | 6.4 GB |
| P6_01_R1.fastq.gz | RNA-Seq | 6.4 GB |
| P6_02_R1.fastq.gz | RNA-Seq | 4.4 GB |
| P6_02_R1.fastq.gz | RNA-Seq | 4.4 GB |
| P6_03_R1.fastq.gz | RNA-Seq | 7.0 GB |
| P6_03_R1.fastq.gz | RNA-Seq | 7.0 GB |
| P6_04_R1.fastq.gz | RNA-Seq | 5.6 GB |
| P6_04_R1.fastq.gz | RNA-Seq | 5.6 GB |
| P7_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_02_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P7_02_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P7_03_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_03_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_04_R1.fastq.gz | RNA-Seq | 818.1 MB |
| P7_04_R1.fastq.gz | RNA-Seq | 818.1 MB |
| P7_05_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P7_05_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P7_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P7_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P7_07_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_07_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_08_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_08_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_09_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P7_09_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P7_10_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P7_10_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P7_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P7_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P7_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P7_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P8_01_R1.fastq.gz | RNA-Seq | 3.4 GB |
| P8_01_R1.fastq.gz | RNA-Seq | 3.4 GB |
| P8_02_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P8_02_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P8_05_R1.fastq.gz | RNA-Seq | 3.8 GB |
| P8_05_R1.fastq.gz | RNA-Seq | 3.8 GB |
| P8_06_R1.fastq.gz | RNA-Seq | 4.6 GB |
| P8_06_R1.fastq.gz | RNA-Seq | 4.6 GB |
| P8_10_R1.fastq.gz | RNA-Seq | 4.0 GB |
| P8_10_R1.fastq.gz | RNA-Seq | 4.0 GB |
| P8_11_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P8_11_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P9_01_R1.fastq.gz | RNA-Seq | 15.6 GB |
| P9_01_R1.fastq.gz | RNA-Seq | 15.6 GB |
| P9_02_R1.fastq.gz | RNA-Seq | 11.6 GB |
| P9_02_R1.fastq.gz | RNA-Seq | 11.6 GB |
| P9_03_R1.fastq.gz | RNA-Seq | 7.8 GB |
| P9_03_R1.fastq.gz | RNA-Seq | 7.8 GB |
| P9_04_R1.fastq.gz | RNA-Seq | 15.0 GB |
| P9_04_R1.fastq.gz | RNA-Seq | 15.0 GB |
Analysis Pipelines (1)
GSE85908 Data Processing
11 steps
geo_data_processing
GSE85908