Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation.
Yan Song, Olga B Botvinnik, Michael T Lovci, Boyko Kakaradov, Patrick Liu, Jia L Xu, Gene W Yeo
Molecular cell · 2017 · Vol. 67 (1) · pp. 148-161.e5
Abstract
Alternative splicing (AS) generates isoform diversity for cellular identity and homeostasis in multicellular life. Although AS variation has been observed among single cells, little is known about the biological or evolutionary significance of such variation. We developed Expedition, a computational framework consisting of outrigger, a de novo splice graph transversal algorithm to detect AS; anchor, a Bayesian approach to assign modalities; and bonvoyage, a visualization tool using non-negative matrix factorization to display modality changes. Applying Expedition to single pluripotent stem cells undergoing neuronal differentiation, we discover that up to 20% of AS exons exhibit bimodality. Bimodal exons are flanked by more conserved intronic sequences harboring distinct cis-regulatory motifs, constitute much of cell-type-specific splicing, are highly dynamic during cellular transitions, preserve reading frame, and reveal intricacy of cell states invisible to conventional gene expression analysis. Systematic AS characterization in single cells redefines our understanding of AS complexity in cell biology.
Linked datasets 1
Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation
Homo sapiens
428 data files
| File | Type | Size |
|---|---|---|
| CVN_01_R1.fastq.gz | RNA-Seq | 800.1 MB |
| CVN_02_R1.fastq.gz | RNA-Seq | 900.0 MB |
| CVN_03_R1.fastq.gz | RNA-Seq | 894.4 MB |
| CVN_04_R1.fastq.gz | RNA-Seq | 843.7 MB |
| CVN_05_R1.fastq.gz | RNA-Seq | 933.1 MB |
| CVN_06_R1.fastq.gz | RNA-Seq | 911.1 MB |
| CVN_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_08_R1.fastq.gz | RNA-Seq | 995.8 MB |
| CVN_09_R1.fastq.gz | RNA-Seq | 753.2 MB |
| CVN_11_R1.fastq.gz | RNA-Seq | 955.0 MB |
| CVN_12_R1.fastq.gz | RNA-Seq | 1018.6 MB |
| CVN_13_R1.fastq.gz | RNA-Seq | 882.5 MB |
| CVN_14_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_15_R1.fastq.gz | RNA-Seq | 864.3 MB |
| CVN_16_R1.fastq.gz | RNA-Seq | 841.8 MB |
| CVN_17_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_18_R1.fastq.gz | RNA-Seq | 602.5 MB |
| CVN_19_R1.fastq.gz | RNA-Seq | 719.5 MB |
| CVN_20_R1.fastq.gz | RNA-Seq | 649.6 MB |
| CVN_21_R1.fastq.gz | RNA-Seq | 776.2 MB |
| CVN_22_R1.fastq.gz | RNA-Seq | 657.0 MB |
| CVN_23_R1.fastq.gz | RNA-Seq | 633.2 MB |
| CVN_24_R1.fastq.gz | RNA-Seq | 701.9 MB |
| CVN_25_R1.fastq.gz | RNA-Seq | 614.8 MB |
| CVN_26_R1.fastq.gz | RNA-Seq | 681.1 MB |
| CVN_27_R1.fastq.gz | RNA-Seq | 607.9 MB |
| CVN_28_R1.fastq.gz | RNA-Seq | 672.4 MB |
| CVN_29_R1.fastq.gz | RNA-Seq | 708.1 MB |
| CVN_30_R1.fastq.gz | RNA-Seq | 811.2 MB |
| CVN_31_R1.fastq.gz | RNA-Seq | 962.1 MB |
| CVN_32_R1.fastq.gz | RNA-Seq | 1.1 GB |
| CVN_33_R1.fastq.gz | RNA-Seq | 931.3 MB |
| CVN_34_R1.fastq.gz | RNA-Seq | 399.2 MB |
| CVN_35_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_02_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_03_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_04_R1.fastq.gz | RNA-Seq | 1.0 GB |
| M1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| M1_07_R1.fastq.gz | RNA-Seq | 2.4 GB |
| M1_08_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| M1_10_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M1_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M1_12_R1.fastq.gz | RNA-Seq | 3.3 GB |
| M2_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| M2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_04_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_05_R1.fastq.gz | RNA-Seq | 1.5 GB |
| M2_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M2_07_R1.fastq.gz | RNA-Seq | 1.9 GB |
| M2_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| M2_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2_10_R1.fastq.gz | RNA-Seq | 2.1 GB |
| M2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| M2_12_R1.fastq.gz | RNA-Seq | 1.7 GB |
| M2nd_01_R1.fastq.gz | RNA-Seq | 227.2 MB |
| M2nd_02_R1.fastq.gz | RNA-Seq | 512.8 MB |
| M2nd_03_R1.fastq.gz | RNA-Seq | 597.1 MB |
| M2nd_04_R1.fastq.gz | RNA-Seq | 419.9 MB |
| M2nd_05_R1.fastq.gz | RNA-Seq | 448.2 MB |
| M2nd_06_R1.fastq.gz | RNA-Seq | 704.5 MB |
| M2nd_07_R1.fastq.gz | RNA-Seq | 873.9 MB |
| M2nd_08_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_09_R1.fastq.gz | RNA-Seq | 174.9 MB |
| M2nd_10_R1.fastq.gz | RNA-Seq | 357.9 MB |
| M2nd_11_R1.fastq.gz | RNA-Seq | 331.4 MB |
| M2nd_12_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_13_R1.fastq.gz | RNA-Seq | 3.6 GB |
| M2nd_14_R1.fastq.gz | RNA-Seq | 541.3 MB |
| M2nd_15_R1.fastq.gz | RNA-Seq | 466.3 MB |
| M2nd_16_R1.fastq.gz | RNA-Seq | 421.6 MB |
| M2nd_17_R1.fastq.gz | RNA-Seq | 232.6 MB |
| M2nd_18_R1.fastq.gz | RNA-Seq | 519.8 MB |
| M2nd_19_R1.fastq.gz | RNA-Seq | 337.5 MB |
| M2nd_20_R1.fastq.gz | RNA-Seq | 440.5 MB |
| M2nd_21_R1.fastq.gz | RNA-Seq | 3.5 GB |
| M2nd_22_R1.fastq.gz | RNA-Seq | 624.8 MB |
| M2nd_24_R1.fastq.gz | RNA-Seq | 296.1 MB |
| M2nd_25_R1.fastq.gz | RNA-Seq | 288.6 MB |
| M2nd_26_R1.fastq.gz | RNA-Seq | 316.2 MB |
| M2nd_27_R1.fastq.gz | RNA-Seq | 162.4 MB |
| M2nd_28_R1.fastq.gz | RNA-Seq | 214.9 MB |
| M2nd_29_R1.fastq.gz | RNA-Seq | 262.3 MB |
| M2nd_33_R1.fastq.gz | RNA-Seq | 1.1 GB |
| M2nd_34_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M3_01_R1.fastq.gz | RNA-Seq | 990.4 MB |
| M3_02_R1.fastq.gz | RNA-Seq | 2.0 GB |
| M3_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| M3_07_R1.fastq.gz | RNA-Seq | 964.3 MB |
| M3_14_R1.fastq.gz | RNA-Seq | 715.8 MB |
| M4_05_R1.fastq.gz | RNA-Seq | 1.2 GB |
| M4_06_R1.fastq.gz | RNA-Seq | 522.7 MB |
| M4_11_R1.fastq.gz | RNA-Seq | 535.8 MB |
| M4_12_R1.fastq.gz | RNA-Seq | 544.1 MB |
| M4_13_R1.fastq.gz | RNA-Seq | 962.7 MB |
| M4_14_R1.fastq.gz | RNA-Seq | 628.1 MB |
| M5_01_R1.fastq.gz | RNA-Seq | 2.8 GB |
| M5_02_R1.fastq.gz | RNA-Seq | 4.2 GB |
| M5_03_R1.fastq.gz | RNA-Seq | 4.1 GB |
| M5_04_R1.fastq.gz | RNA-Seq | 3.7 GB |
| M6_02_R1.fastq.gz | RNA-Seq | 6.0 GB |
| M6_03_R1.fastq.gz | RNA-Seq | 13.9 GB |
| M6_04_R1.fastq.gz | RNA-Seq | 10.9 GB |
| M6_05_R1.fastq.gz | RNA-Seq | 11.3 GB |
| M6_06_R1.fastq.gz | RNA-Seq | 11.8 GB |
| M6_07_R1.fastq.gz | RNA-Seq | 12.8 GB |
| N1_01_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N1_03_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N1_05_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_06_R1.fastq.gz | RNA-Seq | 963.1 MB |
| N1_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N1_08_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N1_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N1_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N1_11_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N1_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N2_01_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_02_R1.fastq.gz | RNA-Seq | 2.5 GB |
| N2_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_04_R1.fastq.gz | RNA-Seq | 2.1 GB |
| N2_05_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N2_06_R1.fastq.gz | RNA-Seq | 1.9 GB |
| N2_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N2_08_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N2_10_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N2_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| N2_12_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_01_R1.fastq.gz | RNA-Seq | 2.4 GB |
| N3_02_R1.fastq.gz | RNA-Seq | 2.8 GB |
| N3_03_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N3_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_06_R1.fastq.gz | RNA-Seq | 1.8 GB |
| N3_07_R1.fastq.gz | RNA-Seq | 1.2 GB |
| N3_09_R1.fastq.gz | RNA-Seq | 1.7 GB |
| N3_10_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N3_11_R1.fastq.gz | RNA-Seq | 1.6 GB |
| N3_12_R1.fastq.gz | RNA-Seq | 2.0 GB |
| N4_04_R1.fastq.gz | RNA-Seq | 1.5 GB |
| N4_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_06_R1.fastq.gz | RNA-Seq | 1.3 GB |
| N4_09_R1.fastq.gz | RNA-Seq | 727.2 MB |
| N4_10_R1.fastq.gz | RNA-Seq | 1.4 GB |
| N5_06_R1.fastq.gz | RNA-Seq | 2.3 GB |
| N5_10_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_01_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_02_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_03_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P1_04_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P1_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P1_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_07_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P1_08_R1.fastq.gz | RNA-Seq | 612.1 MB |
| P1_09_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P1_10_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P1_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P1_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P2_01_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_02_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_03_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_04_R1.fastq.gz | RNA-Seq | 2.3 GB |
| P2_05_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_06_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P2_07_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_08_R1.fastq.gz | RNA-Seq | 947.8 MB |
| P2_09_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P2_10_R1.fastq.gz | RNA-Seq | 3.3 GB |
| P2_11_R1.fastq.gz | RNA-Seq | 1.4 GB |
| P2_12_R1.fastq.gz | RNA-Seq | 1.5 GB |
| P2_13_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P2_14_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P3_01_R1.fastq.gz | RNA-Seq | 6.3 GB |
| P3_02_R1.fastq.gz | RNA-Seq | 6.7 GB |
| P3_03_R1.fastq.gz | RNA-Seq | 7.7 GB |
| P4_01_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_06_R1.fastq.gz | RNA-Seq | 1.0 GB |
| P4_07_R1.fastq.gz | RNA-Seq | 1.1 GB |
| P4_08_R1.fastq.gz | RNA-Seq | 896.8 MB |
| P4_09_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P4_10_R1.fastq.gz | RNA-Seq | 2.5 GB |
| P4_11_R1.fastq.gz | RNA-Seq | 1.3 GB |
| P4_12_R1.fastq.gz | RNA-Seq | 1.2 GB |
| P6_01_R1.fastq.gz | RNA-Seq | 6.4 GB |
| P6_02_R1.fastq.gz | RNA-Seq | 4.4 GB |
| P6_03_R1.fastq.gz | RNA-Seq | 7.0 GB |
| P6_04_R1.fastq.gz | RNA-Seq | 5.6 GB |
| P7_01_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_02_R1.fastq.gz | RNA-Seq | 1.8 GB |
| P7_03_R1.fastq.gz | RNA-Seq | 1.6 GB |
| P7_04_R1.fastq.gz | RNA-Seq | 818.1 MB |
| P7_05_R1.fastq.gz | RNA-Seq | 2.0 GB |
| P7_06_R1.fastq.gz | RNA-Seq | 2.4 GB |
| P7_07_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_08_R1.fastq.gz | RNA-Seq | 1.7 GB |
| P7_09_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P7_10_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P7_11_R1.fastq.gz | RNA-Seq | 2.2 GB |
| P7_12_R1.fastq.gz | RNA-Seq | 1.9 GB |
| P8_01_R1.fastq.gz | RNA-Seq | 3.4 GB |
| P8_02_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P8_05_R1.fastq.gz | RNA-Seq | 3.8 GB |
| P8_06_R1.fastq.gz | RNA-Seq | 4.6 GB |
| P8_10_R1.fastq.gz | RNA-Seq | 4.0 GB |
| P8_11_R1.fastq.gz | RNA-Seq | 3.7 GB |
| P9_01_R1.fastq.gz | RNA-Seq | 15.6 GB |
| P9_02_R1.fastq.gz | RNA-Seq | 11.6 GB |
| P9_03_R1.fastq.gz | RNA-Seq | 7.8 GB |
| P9_04_R1.fastq.gz | RNA-Seq | 15.0 GB |
| SRR4047245_GSM2286986 | RNA-Seq | 800.0 MB |
| SRR4047246_GSM2286987 | RNA-Seq | 900.0 MB |
| SRR4047247_GSM2286988 | RNA-Seq | 894.0 MB |
| SRR4047248_GSM2286989 | RNA-Seq | 843.0 MB |
| SRR4047249_GSM2286990 | RNA-Seq | 933.0 MB |
| SRR4047250_GSM2286991 | RNA-Seq | 911.0 MB |
| SRR4047251_GSM2286992 | RNA-Seq | 1.1 GB |
| SRR4047252_GSM2286993 | RNA-Seq | 995.0 MB |
| SRR4047253_GSM2286994 | RNA-Seq | 753.0 MB |
| SRR4047254_GSM2286995 | RNA-Seq | 955.0 MB |
| SRR4047255_GSM2286996 | RNA-Seq | 1018.0 MB |
| SRR4047256_GSM2286997 | RNA-Seq | 882.0 MB |
| SRR4047257_GSM2286998 | RNA-Seq | 1.1 GB |
| SRR4047258_GSM2286999 | RNA-Seq | 864.0 MB |
| SRR4047259_GSM2287000 | RNA-Seq | 841.0 MB |
| SRR4047260_GSM2287001 | RNA-Seq | 1.1 GB |
| SRR4047261_GSM2287002 | RNA-Seq | 602.0 MB |
| SRR4047262_GSM2287003 | RNA-Seq | 719.0 MB |
| SRR4047263_GSM2287004 | RNA-Seq | 649.0 MB |
| SRR4047264_GSM2287005 | RNA-Seq | 776.0 MB |
| SRR4047265_GSM2287006 | RNA-Seq | 657.0 MB |
| SRR4047266_GSM2287007 | RNA-Seq | 633.0 MB |
| SRR4047267_GSM2287008 | RNA-Seq | 701.0 MB |
| SRR4047268_GSM2287009 | RNA-Seq | 614.0 MB |
| SRR4047269_GSM2287010 | RNA-Seq | 681.0 MB |
| SRR4047270_GSM2287011 | RNA-Seq | 607.0 MB |
| SRR4047271_GSM2287012 | RNA-Seq | 672.0 MB |
| SRR4047272_GSM2287013 | RNA-Seq | 708.0 MB |
| SRR4047273_GSM2287014 | RNA-Seq | 811.0 MB |
| SRR4047274_GSM2287015 | RNA-Seq | 962.0 MB |
| SRR4047275_GSM2287016 | RNA-Seq | 1.1 GB |
| SRR4047276_GSM2287017 | RNA-Seq | 931.0 MB |
| SRR4047277_GSM2287018 | RNA-Seq | 399.0 MB |
| SRR4047278_GSM2287019 | RNA-Seq | 1.3 GB |
| SRR4047279_GSM2287020 | RNA-Seq | 1.4 GB |
| SRR4047280_GSM2287021 | RNA-Seq | 1.4 GB |
| SRR4047281_GSM2287022 | RNA-Seq | 2.3 GB |
| SRR4047282_GSM2287023 | RNA-Seq | 1.0 GB |
| SRR4047283_GSM2287024 | RNA-Seq | 1.3 GB |
| SRR4047284_GSM2287025 | RNA-Seq | 2.3 GB |
| SRR4047285_GSM2287026 | RNA-Seq | 2.4 GB |
| SRR4047286_GSM2287027 | RNA-Seq | 1.3 GB |
| SRR4047287_GSM2287028 | RNA-Seq | 1.4 GB |
| SRR4047288_GSM2287029 | RNA-Seq | 1.6 GB |
| SRR4047289_GSM2287030 | RNA-Seq | 1.3 GB |
| SRR4047290_GSM2287031 | RNA-Seq | 3.3 GB |
| SRR4047291_GSM2287032 | RNA-Seq | 1.6 GB |
| SRR4047292_GSM2287033 | RNA-Seq | 1.5 GB |
| SRR4047293_GSM2287034 | RNA-Seq | 1.7 GB |
| SRR4047294_GSM2287035 | RNA-Seq | 1.8 GB |
| SRR4047295_GSM2287036 | RNA-Seq | 1.5 GB |
| SRR4047296_GSM2287037 | RNA-Seq | 1.3 GB |
| SRR4047297_GSM2287038 | RNA-Seq | 1.9 GB |
| SRR4047298_GSM2287039 | RNA-Seq | 1.8 GB |
| SRR4047299_GSM2287040 | RNA-Seq | 1.7 GB |
| SRR4047300_GSM2287041 | RNA-Seq | 2.1 GB |
| SRR4047301_GSM2287042 | RNA-Seq | 2.2 GB |
| SRR4047302_GSM2287043 | RNA-Seq | 1.7 GB |
| SRR4047303_GSM2287044 | RNA-Seq | 227.0 MB |
| SRR4047304_GSM2287045 | RNA-Seq | 512.0 MB |
| SRR4047305_GSM2287046 | RNA-Seq | 597.0 MB |
| SRR4047306_GSM2287047 | RNA-Seq | 419.0 MB |
| SRR4047307_GSM2287048 | RNA-Seq | 448.0 MB |
| SRR4047308_GSM2287049 | RNA-Seq | 704.0 MB |
| SRR4047309_GSM2287050 | RNA-Seq | 873.0 MB |
| SRR4047310_GSM2287051 | RNA-Seq | 1.1 GB |
| SRR4047311_GSM2287052 | RNA-Seq | 174.0 MB |
| SRR4047312_GSM2287053 | RNA-Seq | 357.0 MB |
| SRR4047313_GSM2287054 | RNA-Seq | 331.0 MB |
| SRR4047314_GSM2287055 | RNA-Seq | 1.1 GB |
| SRR4047315_GSM2287056 | RNA-Seq | 3.6 GB |
| SRR4047316_GSM2287057 | RNA-Seq | 541.0 MB |
| SRR4047317_GSM2287058 | RNA-Seq | 466.0 MB |
| SRR4047318_GSM2287059 | RNA-Seq | 421.0 MB |
| SRR4047319_GSM2287060 | RNA-Seq | 232.0 MB |
| SRR4047320_GSM2287061 | RNA-Seq | 519.0 MB |
| SRR4047321_GSM2287062 | RNA-Seq | 337.0 MB |
| SRR4047322_GSM2287063 | RNA-Seq | 440.0 MB |
| SRR4047323_GSM2287064 | RNA-Seq | 3.5 GB |
| SRR4047324_GSM2287065 | RNA-Seq | 624.0 MB |
| SRR4047325_GSM2287066 | RNA-Seq | 296.0 MB |
| SRR4047326_GSM2287067 | RNA-Seq | 288.0 MB |
| SRR4047327_GSM2287068 | RNA-Seq | 316.0 MB |
| SRR4047328_GSM2287069 | RNA-Seq | 162.0 MB |
| SRR4047329_GSM2287070 | RNA-Seq | 214.0 MB |
| SRR4047330_GSM2287071 | RNA-Seq | 262.0 MB |
| SRR4047331_GSM2287072 | RNA-Seq | 1.1 GB |
| SRR4047332_GSM2287073 | RNA-Seq | 1.3 GB |
| SRR4047333_GSM2287074 | RNA-Seq | 990.0 MB |
| SRR4047334_GSM2287075 | RNA-Seq | 2.0 GB |
| SRR4047335_GSM2287076 | RNA-Seq | 1.3 GB |
| SRR4047336_GSM2287077 | RNA-Seq | 964.0 MB |
| SRR4047337_GSM2287078 | RNA-Seq | 715.0 MB |
| SRR4047338_GSM2287079 | RNA-Seq | 1.2 GB |
| SRR4047339_GSM2287080 | RNA-Seq | 522.0 MB |
| SRR4047340_GSM2287081 | RNA-Seq | 535.0 MB |
| SRR4047341_GSM2287082 | RNA-Seq | 544.0 MB |
| SRR4047342_GSM2287083 | RNA-Seq | 962.0 MB |
| SRR4047343_GSM2287084 | RNA-Seq | 628.0 MB |
| SRR4047344_GSM2287085 | RNA-Seq | 2.8 GB |
| SRR4047345_GSM2287086 | RNA-Seq | 4.2 GB |
| SRR4047346_GSM2287087 | RNA-Seq | 4.1 GB |
| SRR4047347_GSM2287088 | RNA-Seq | 3.7 GB |
| SRR4047348_GSM2287089 | RNA-Seq | 6.0 GB |
| SRR4047349_GSM2287090 | RNA-Seq | 13.9 GB |
| SRR4047350_GSM2287091 | RNA-Seq | 10.9 GB |
| SRR4047351_GSM2287092 | RNA-Seq | 11.3 GB |
| SRR4047352_GSM2287093 | RNA-Seq | 11.8 GB |
| SRR4047353_GSM2287094 | RNA-Seq | 12.8 GB |
| SRR4047354_GSM2287095 | RNA-Seq | 1.8 GB |
| SRR4047355_GSM2287096 | RNA-Seq | 2.2 GB |
| SRR4047356_GSM2287097 | RNA-Seq | 1.8 GB |
| SRR4047357_GSM2287098 | RNA-Seq | 2.1 GB |
| SRR4047358_GSM2287099 | RNA-Seq | 1.8 GB |
| SRR4047359_GSM2287100 | RNA-Seq | 963.0 MB |
| SRR4047360_GSM2287101 | RNA-Seq | 1.5 GB |
| SRR4047361_GSM2287102 | RNA-Seq | 1.8 GB |
| SRR4047362_GSM2287103 | RNA-Seq | 1.3 GB |
| SRR4047363_GSM2287104 | RNA-Seq | 1.4 GB |
| SRR4047364_GSM2287105 | RNA-Seq | 1.2 GB |
| SRR4047365_GSM2287106 | RNA-Seq | 1.9 GB |
| SRR4047366_GSM2287107 | RNA-Seq | 1.7 GB |
| SRR4047367_GSM2287108 | RNA-Seq | 2.5 GB |
| SRR4047368_GSM2287109 | RNA-Seq | 1.7 GB |
| SRR4047369_GSM2287110 | RNA-Seq | 2.1 GB |
| SRR4047370_GSM2287111 | RNA-Seq | 1.4 GB |
| SRR4047371_GSM2287112 | RNA-Seq | 1.9 GB |
| SRR4047372_GSM2287113 | RNA-Seq | 1.8 GB |
| SRR4047373_GSM2287114 | RNA-Seq | 2.2 GB |
| SRR4047374_GSM2287115 | RNA-Seq | 1.3 GB |
| SRR4047375_GSM2287116 | RNA-Seq | 1.7 GB |
| SRR4047376_GSM2287117 | RNA-Seq | 2.2 GB |
| SRR4047377_GSM2287118 | RNA-Seq | 1.3 GB |
| SRR4047378_GSM2287119 | RNA-Seq | 2.4 GB |
| SRR4047379_GSM2287120 | RNA-Seq | 2.8 GB |
| SRR4047380_GSM2287121 | RNA-Seq | 1.7 GB |
| SRR4047381_GSM2287122 | RNA-Seq | 1.5 GB |
| SRR4047382_GSM2287123 | RNA-Seq | 1.3 GB |
| SRR4047383_GSM2287124 | RNA-Seq | 1.8 GB |
| SRR4047384_GSM2287125 | RNA-Seq | 1.2 GB |
| SRR4047385_GSM2287126 | RNA-Seq | 1.7 GB |
| SRR4047386_GSM2287127 | RNA-Seq | 1.3 GB |
| SRR4047387_GSM2287128 | RNA-Seq | 1.6 GB |
| SRR4047388_GSM2287129 | RNA-Seq | 2.0 GB |
| SRR4047389_GSM2287130 | RNA-Seq | 1.5 GB |
| SRR4047390_GSM2287131 | RNA-Seq | 1.3 GB |
| SRR4047391_GSM2287132 | RNA-Seq | 1.3 GB |
| SRR4047392_GSM2287133 | RNA-Seq | 727.0 MB |
| SRR4047393_GSM2287134 | RNA-Seq | 1.4 GB |
| SRR4047394_GSM2287135 | RNA-Seq | 2.3 GB |
| SRR4047395_GSM2287136 | RNA-Seq | 2.2 GB |
| SRR4047396_GSM2287137 | RNA-Seq | 2.0 GB |
| SRR4047397_GSM2287138 | RNA-Seq | 2.2 GB |
| SRR4047398_GSM2287139 | RNA-Seq | 2.0 GB |
| SRR4047399_GSM2287140 | RNA-Seq | 1.6 GB |
| SRR4047400_GSM2287141 | RNA-Seq | 1.3 GB |
| SRR4047401_GSM2287142 | RNA-Seq | 2.4 GB |
| SRR4047402_GSM2287143 | RNA-Seq | 1.8 GB |
| SRR4047403_GSM2287144 | RNA-Seq | 612.0 MB |
| SRR4047404_GSM2287145 | RNA-Seq | 1.4 GB |
| SRR4047405_GSM2287146 | RNA-Seq | 2.4 GB |
| SRR4047406_GSM2287147 | RNA-Seq | 2.2 GB |
| SRR4047407_GSM2287148 | RNA-Seq | 1.2 GB |
| SRR4047408_GSM2287149 | RNA-Seq | 1.4 GB |
| SRR4047409_GSM2287150 | RNA-Seq | 1.5 GB |
| SRR4047410_GSM2287151 | RNA-Seq | 1.3 GB |
| SRR4047411_GSM2287152 | RNA-Seq | 2.3 GB |
| SRR4047412_GSM2287153 | RNA-Seq | 1.3 GB |
| SRR4047413_GSM2287154 | RNA-Seq | 1.2 GB |
| SRR4047414_GSM2287155 | RNA-Seq | 1.5 GB |
| SRR4047415_GSM2287156 | RNA-Seq | 947.0 MB |
| SRR4047416_GSM2287157 | RNA-Seq | 1.3 GB |
| SRR4047417_GSM2287158 | RNA-Seq | 3.3 GB |
| SRR4047418_GSM2287159 | RNA-Seq | 1.4 GB |
| SRR4047419_GSM2287160 | RNA-Seq | 1.5 GB |
| SRR4047420_GSM2287161 | RNA-Seq | 2.2 GB |
| SRR4047421_GSM2287162 | RNA-Seq | 2.0 GB |
| SRR4047422_GSM2287163 | RNA-Seq | 6.3 GB |
| SRR4047423_GSM2287164 | RNA-Seq | 6.7 GB |
| SRR4047424_GSM2287165 | RNA-Seq | 7.7 GB |
| SRR4047425_GSM2287166 | RNA-Seq | 1.3 GB |
| SRR4047426_GSM2287167 | RNA-Seq | 1.0 GB |
| SRR4047427_GSM2287168 | RNA-Seq | 1.1 GB |
| SRR4047428_GSM2287169 | RNA-Seq | 896.0 MB |
| SRR4047429_GSM2287170 | RNA-Seq | 1.2 GB |
| SRR4047430_GSM2287171 | RNA-Seq | 2.5 GB |
| SRR4047431_GSM2287172 | RNA-Seq | 1.3 GB |
| SRR4047432_GSM2287173 | RNA-Seq | 1.2 GB |
| SRR4047433_GSM2287174 | RNA-Seq | 6.4 GB |
| SRR4047434_GSM2287175 | RNA-Seq | 4.4 GB |
| SRR4047435_GSM2287176 | RNA-Seq | 7.0 GB |
| SRR4047436_GSM2287177 | RNA-Seq | 5.6 GB |
| SRR4047437_GSM2287178 | RNA-Seq | 1.6 GB |
| SRR4047438_GSM2287179 | RNA-Seq | 1.8 GB |
| SRR4047439_GSM2287180 | RNA-Seq | 1.6 GB |
| SRR4047440_GSM2287181 | RNA-Seq | 818.0 MB |
| SRR4047441_GSM2287182 | RNA-Seq | 2.0 GB |
| SRR4047442_GSM2287183 | RNA-Seq | 2.4 GB |
| SRR4047443_GSM2287184 | RNA-Seq | 1.7 GB |
| SRR4047444_GSM2287185 | RNA-Seq | 1.7 GB |
| SRR4047445_GSM2287186 | RNA-Seq | 3.7 GB |
| SRR4047446_GSM2287187 | RNA-Seq | 1.9 GB |
| SRR4047447_GSM2287188 | RNA-Seq | 2.2 GB |
| SRR4047448_GSM2287189 | RNA-Seq | 1.9 GB |
| SRR4047449_GSM2287190 | RNA-Seq | 3.4 GB |
| SRR4047450_GSM2287191 | RNA-Seq | 3.7 GB |
| SRR4047451_GSM2287192 | RNA-Seq | 3.8 GB |
| SRR4047452_GSM2287193 | RNA-Seq | 4.6 GB |
| SRR4047453_GSM2287194 | RNA-Seq | 4.0 GB |
| SRR4047454_GSM2287195 | RNA-Seq | 3.7 GB |
| SRR4047455_GSM2287196 | RNA-Seq | 15.6 GB |
| SRR4047456_GSM2287197 | RNA-Seq | 11.6 GB |
| SRR4047457_GSM2287198 | RNA-Seq | 7.8 GB |
| SRR4047458_GSM2287199 | RNA-Seq | 15.0 GB |
Analysis pipelines 1
| Pipeline | Assay | Steps | Dataset |
|---|---|---|---|
| GSE85908 Data Processing geo_data_processing | — | 11 | GSE85908 |
Funding 7 grants
| Grant | Funder |
|---|---|
| R01 HG004659 | NHGRI NIH HHS (United States) |
| P30 NS047101 | NINDS NIH HHS (United States) |
| U19 MH107367 | NIMH NIH HHS (United States) |
| R01 AI123202 | NIAID NIH HHS (United States) |
| R01 HD085902 | NICHD NIH HHS (United States) |
| R01 NS075449 | NINDS NIH HHS (United States) |
| R01 AI095277 | NIAID NIH HHS (United States) |