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Heterogeneity and clonal relationships of adaptive immune cells in ulcerative colitis revealed by single-cell analyses.

Brigid S Boland, Zhaoren He, Matthew S Tsai, Jocelyn G Olvera, Kyla D Omilusik, Han G Duong, Eleanor S Kim, Abigail E Limary, Wenhao Jin, J Justin Milner, Bingfei Yu, Shefali A Patel, Tiani L Louis, Tiffani Tysl, Nadia S Kurd, Alexandra Bortnick, Lauren K Quezada, Jad N Kanbar, Ara Miralles, Danny Huylebroeck, Mark A Valasek, Parambir S Dulai, Siddharth Singh, Li-Fan Lu, Jack D Bui, Cornelis Murre, William J Sandborn, Ananda W Goldrath, Gene W Yeo, John T Chang

Science immunology · 2020 · Vol. 5 (50)

Abstract

Inflammatory bowel disease (IBD) encompasses a spectrum of gastrointestinal disorders driven by dysregulated immune responses against gut microbiota. We integrated single-cell RNA and antigen receptor sequencing to elucidate key components, cellular states, and clonal relationships of the peripheral and gastrointestinal mucosal immune systems in health and ulcerative colitis (UC). UC was associated with an increase in IgG1<sup>+</sup> plasma cells in colonic tissue, increased colonic regulatory T cells characterized by elevated expression of the transcription factor ZEB2, and an enrichment of a γδ T cell subset in the peripheral blood. Moreover, we observed heterogeneity in CD8<sup>+</sup> tissue-resident memory T (T<sub>RM</sub>) cells in colonic tissue, with four transcriptionally distinct states of differentiation observed across health and disease. In the setting of UC, there was a marked shift of clonally related CD8<sup>+</sup> T<sub>RM</sub> cells toward an inflammatory state, mediated, in part, by increased expression of the T-box transcription factor Eomesodermin. Together, these results provide a detailed atlas of transcriptional changes occurring in adaptive immune cells in the context of UC and suggest a role for CD8<sup>+</sup> T<sub>RM</sub> cells in IBD.

Linked datasets 1

GSE125527 GSE · via ncbi_elink
GEO ↗

Single-Cell Analyses Elucidate the Cellular and Molecular Landscape of Ulcerative Colitis

Homo sapiens

793 data files
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BB21_T_S54_L003_R1_001.fastq.gz OTHER 4.3 GB
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BB22_B_S55_L003_R1_001.fastq.gz OTHER 4.8 GB
BB22_T_S56_L002_R1_001.fastq.gz OTHER 3.3 GB
BB22_T_S56_L002_R2_001.fastq.gz OTHER 3.3 GB
BB22_T_S56_L003_R1_001.fastq.gz OTHER 3.3 GB
BB23_T_S58_L002_R1_001.fastq.gz OTHER 4.4 GB
BB23_T_S58_L003_R1_001.fastq.gz OTHER 4.4 GB
BB24_B_S59_L002_R1_001.fastq.gz OTHER 3.2 GB
BB24_B_S59_L003_R1_001.fastq.gz OTHER 3.2 GB
BB24_T_S60_L002_R1_001.fastq.gz OTHER 3.8 GB
BB24_T_S60_L003_R1_001.fastq.gz OTHER 3.8 GB
BB25_B_S61_L002_R1_001.fastq.gz OTHER 4.4 GB
BB25_B_S61_L003_R1_001.fastq.gz OTHER 4.3 GB
BB25_T_S62_L002_R1_001.fastq.gz OTHER 3.7 GB
BB25_T_S62_L003_R1_001.fastq.gz OTHER 3.7 GB
BB28_B_S67_L002_R1_001.fastq.gz OTHER 3.6 GB
BB28_B_S67_L003_R1_001.fastq.gz OTHER 3.6 GB
BB28_T_S68_L002_R1_001.fastq.gz OTHER 4.8 GB
BB28_T_S68_L003_R1_001.fastq.gz OTHER 4.8 GB
BB29_B_S69_L002_R1_001.fastq.gz OTHER 4.2 GB
BB29_B_S69_L003_R1_001.fastq.gz OTHER 4.1 GB
BB29_T_S70_L002_R1_001.fastq.gz OTHER 7.9 GB
BB29_T_S70_L002_R2_001.fastq.gz OTHER 7.9 GB
BB29_T_S70_L003_R1_001.fastq.gz OTHER 7.8 GB
BB30_B_S71_L002_R1_001.fastq.gz OTHER 3.6 GB
BB30_B_S71_L003_R1_001.fastq.gz OTHER 3.6 GB
BB30_T_S72_L002_R1_001.fastq.gz OTHER 3.7 GB
BB30_T_S72_L003_R1_001.fastq.gz OTHER 3.7 GB
BB31_B_S73_L002_R1_001.fastq.gz OTHER 9.9 GB
BB31_B_S73_L003_R1_001.fastq.gz OTHER 9.9 GB
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BB31_T_S74_L003_R1_001.fastq.gz OTHER 3.9 GB
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BB32_B_S75_L003_R1_001.fastq.gz OTHER 4.5 GB
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BB32_T_S76_L003_R1_001.fastq.gz OTHER 3.1 GB
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BB33_B_S77_L003_R1_001.fastq.gz OTHER 5.6 GB
BB33_T_S78_L002_R1_001.fastq.gz OTHER 3.9 GB
BB33_T_S78_L003_R1_001.fastq.gz OTHER 3.9 GB
C12pBMCBCR_S13_L001_R1_001.fastq.gz OTHER 2.0 MB
C12pBMCBCR_S14_L001_R1_001.fastq.gz OTHER 3.0 MB
C12pBMCBCR_S15_L001_R1_001.fastq.gz OTHER 2.7 MB
C12pBMCBCR_S16_L001_R1_001.fastq.gz OTHER 1.6 MB
C12_pBMC_BCR_S34_L003_R1_001.fastq.gz OTHER 18.6 GB
C12pBMCSC_S65_L007_R1_001.fastq.gz RNA-Seq 509.4 MB
C12pBMCSC_S66_L007_R1_001.fastq.gz RNA-Seq 418.0 MB
C12pBMCSC_S67_L007_R1_001.fastq.gz RNA-Seq 422.3 MB
C12pBMCSC_S68_L007_R1_001.fastq.gz RNA-Seq 538.3 MB
C12pBMCTCR_S29_L001_R1_001.fastq.gz OTHER 17.9 MB
C12pBMCTCR_S30_L001_R1_001.fastq.gz OTHER 16.1 MB
C12pBMCTCR_S31_L001_R1_001.fastq.gz OTHER 20.6 MB
C12pBMCTCR_S32_L001_R1_001.fastq.gz OTHER 11.6 MB
C12_pBMC_TCR_S35_L003_R1_001.fastq.gz OTHER 6.3 GB
C12RectumBCR_S10_L001_R1_001.fastq.gz OTHER 48.4 MB
C12RectumBCR_S11_L001_R1_001.fastq.gz OTHER 35.3 MB
C12RectumBCR_S12_L001_R1_001.fastq.gz OTHER 50.0 MB
C12_Rectum_BCR_S36_L003_R1_001.fastq.gz OTHER 48.6 GB
C12RectumBCR_S9_L001_R1_001.fastq.gz OTHER 60.9 MB
C12RectumSC_S61_L007_R1_001.fastq.gz RNA-Seq 550.1 MB
C12RectumSC_S62_L007_R1_001.fastq.gz RNA-Seq 474.5 MB
C12RectumSC_S63_L007_R1_001.fastq.gz RNA-Seq 462.3 MB
C12RectumSC_S64_L007_R1_001.fastq.gz RNA-Seq 463.2 MB
C12RectumTCR_1-10_S25_L001_R1_001.fastq.gz OTHER 14.1 MB
C12RectumTCR_1-10_S26_L001_R1_001.fastq.gz OTHER 8.9 MB
C12RectumTCR_1-10_S27_L001_R1_001.fastq.gz OTHER 10.0 MB
C12RectumTCR_1-10_S28_L001_R1_001.fastq.gz OTHER 8.4 MB
C12_Rectum_TCR_S37_L003_R1_001.fastq.gz OTHER 12.1 GB
C16_pbmc_control_16_pbmc_S13_L004_R1_001.fastq.gz RNA-Seq 1.6 GB
C16_pbmc_control_16_pbmc_S14_L004_R1_001.fastq.gz RNA-Seq 1.5 GB
C16_pbmc_control_16_pbmc_S15_L004_R1_001.fastq.gz RNA-Seq 1.4 GB
C16_pbmc_control_16_pbmc_S16_L004_R1_001.fastq.gz RNA-Seq 1.4 GB
C16_P_control_16_pbmc_S1_L003_R1_001.fastq.gz RNA-Seq 838.1 MB
C16_P_control_16_pbmc_S2_L003_R1_001.fastq.gz RNA-Seq 789.2 MB
C16_P_control_16_pbmc_S3_L003_R1_001.fastq.gz RNA-Seq 711.0 MB
C16_P_control_16_pbmc_S4_L003_R1_001.fastq.gz RNA-Seq 717.7 MB
C16_R_control_16_rectum_S5_L003_R1_001.fastq.gz RNA-Seq 1.1 GB
C16_R_control_16_rectum_S6_L003_R1_001.fastq.gz RNA-Seq 393.8 MB
C16_R_control_16_rectum_S7_L003_R1_001.fastq.gz RNA-Seq 573.4 MB
C16_R_control_16_rectum_S8_L003_R1_001.fastq.gz RNA-Seq 579.8 MB
C17_I_10x_S1_L001_R1_001.fastq.gz RNA-Seq 128.0 MB
C17_I_10x_S1_L004_R1_001.fastq.gz RNA-Seq 192.3 MB
C17_I_10x_S1_L005_R1_001.fastq.gz RNA-Seq 188.1 MB
C17_I_10x_S1_L006_R1_001.fastq.gz RNA-Seq 189.0 MB
C17_I_10x_S2_L001_R1_001.fastq.gz RNA-Seq 117.2 MB
C17_I_10x_S2_L004_R1_001.fastq.gz RNA-Seq 166.6 MB
C17_I_10x_S2_L005_R1_001.fastq.gz RNA-Seq 162.5 MB
C17_I_10x_S2_L006_R1_001.fastq.gz RNA-Seq 164.0 MB
C17_I_10x_S3_L001_R1_001.fastq.gz RNA-Seq 253.0 MB
C17_I_10x_S3_L004_R1_001.fastq.gz RNA-Seq 361.1 MB
C17_I_10x_S3_L005_R1_001.fastq.gz RNA-Seq 351.6 MB
C17_I_10x_S3_L006_R1_001.fastq.gz RNA-Seq 356.0 MB
C17_I_10x_S4_L001_R1_001.fastq.gz RNA-Seq 119.9 MB
C17_I_10x_S4_L004_R1_001.fastq.gz RNA-Seq 169.2 MB
C17_I_10x_S4_L004_R1_001.fastq.gz RNA-Seq 169.2 MB
C17_I_10x_S4_L005_R1_001.fastq.gz RNA-Seq 165.4 MB
C17_I_10x_S4_L006_R1_001.fastq.gz RNA-Seq 167.0 MB
C17_I_BCR_S10_L003_R1_001.fastq.gz OTHER 4.3 GB
C17_I_TCR_S25_L003_R1_001.fastq.gz OTHER 5.8 GB
C17_pBMC_10x_S10_L001_R1_001.fastq.gz RNA-Seq 498.7 MB
C17_pBMC_10x_S10_L004_R1_001.fastq.gz RNA-Seq 725.6 MB
C17_pBMC_10x_S10_L005_R1_001.fastq.gz RNA-Seq 709.5 MB
C17_pBMC_10x_S10_L006_R1_001.fastq.gz RNA-Seq 712.4 MB
C17_pBMC_10x_S11_L001_R1_001.fastq.gz RNA-Seq 517.0 MB
C17_pBMC_10x_S11_L004_R1_001.fastq.gz RNA-Seq 748.7 MB
C17_pBMC_10x_S11_L005_R1_001.fastq.gz RNA-Seq 733.8 MB
C17_pBMC_10x_S11_L006_R1_001.fastq.gz RNA-Seq 739.6 MB
C17_pBMC_10x_S12_L001_R1_001.fastq.gz RNA-Seq 545.7 MB
C17_pBMC_10x_S12_L004_R1_001.fastq.gz RNA-Seq 783.0 MB
C17_pBMC_10x_S12_L005_R1_001.fastq.gz RNA-Seq 766.3 MB
C17_pBMC_10x_S12_L006_R1_001.fastq.gz RNA-Seq 772.0 MB
C17_pBMC_10x_S9_L001_R1_001.fastq.gz RNA-Seq 349.1 MB
C17_pBMC_10x_S9_L004_R1_001.fastq.gz RNA-Seq 502.4 MB
C17_pBMC_10x_S9_L005_R1_001.fastq.gz RNA-Seq 492.4 MB
C17_pBMC_10x_S9_L006_R1_001.fastq.gz RNA-Seq 496.3 MB
C17_pBMC_BCR_S12_L003_R1_001.fastq.gz OTHER 4.7 GB
C17_pBMC_TCR_S27_L003_R1_001.fastq.gz OTHER 4.6 GB
C17_R_10x_S5_L001_R1_001.fastq.gz RNA-Seq 259.5 MB
C17_R_10x_S5_L004_R1_001.fastq.gz RNA-Seq 376.3 MB
C17_R_10x_S5_L005_R1_001.fastq.gz RNA-Seq 367.3 MB
C17_R_10x_S5_L006_R1_001.fastq.gz RNA-Seq 371.2 MB
C17_R_10x_S6_L001_R1_001.fastq.gz RNA-Seq 38.9 MB
C17_R_10x_S6_L004_R1_001.fastq.gz RNA-Seq 54.7 MB
C17_R_10x_S6_L005_R1_001.fastq.gz RNA-Seq 53.3 MB
C17_R_10x_S6_L006_R1_001.fastq.gz RNA-Seq 53.4 MB
C17_R_10x_S7_L001_R1_001.fastq.gz RNA-Seq 247.4 MB
C17_R_10x_S7_L004_R1_001.fastq.gz RNA-Seq 371.9 MB
C17_R_10x_S7_L005_R1_001.fastq.gz RNA-Seq 363.3 MB
C17_R_10x_S7_L006_R1_001.fastq.gz RNA-Seq 366.2 MB
C17_R_10x_S8_L001_R1_001.fastq.gz RNA-Seq 163.9 MB
C17_R_10x_S8_L004_R1_001.fastq.gz RNA-Seq 231.2 MB
C17_R_10x_S8_L005_R1_001.fastq.gz RNA-Seq 225.6 MB
C17_R_10x_S8_L006_R1_001.fastq.gz RNA-Seq 228.5 MB
C17_R_BCR_S11_L003_R1_001.fastq.gz OTHER 2.1 GB
C17_R_TCR_S26_L003_R1_001.fastq.gz OTHER 7.8 GB
C18_I_10x_S13_L001_R1_001.fastq.gz RNA-Seq 208.1 MB
C18_I_10x_S13_L004_R1_001.fastq.gz RNA-Seq 303.3 MB
C18_I_10x_S13_L005_R1_001.fastq.gz RNA-Seq 296.1 MB
C18_I_10x_S13_L006_R1_001.fastq.gz RNA-Seq 299.7 MB
C18_I_10x_S14_L001_R1_001.fastq.gz RNA-Seq 287.1 MB
C18_I_10x_S14_L004_R1_001.fastq.gz RNA-Seq 419.6 MB
C18_I_10x_S14_L005_R1_001.fastq.gz RNA-Seq 408.9 MB
C18_I_10x_S14_L006_R1_001.fastq.gz RNA-Seq 412.3 MB
C18_I_10x_S15_L001_R1_001.fastq.gz RNA-Seq 192.9 MB
C18_I_10x_S15_L004_R1_001.fastq.gz RNA-Seq 272.8 MB
C18_I_10x_S15_L005_R1_001.fastq.gz RNA-Seq 266.3 MB
C18_I_10x_S15_L006_R1_001.fastq.gz RNA-Seq 269.2 MB
C18_I_10x_S16_L001_R1_001.fastq.gz RNA-Seq 241.9 MB
C18_I_10x_S16_L004_R1_001.fastq.gz RNA-Seq 368.2 MB
C18_I_10x_S16_L005_R1_001.fastq.gz RNA-Seq 359.7 MB
C18_I_10x_S16_L006_R1_001.fastq.gz RNA-Seq 364.1 MB
C18_I_BCR_S13_L003_R1_001.fastq.gz OTHER 8.9 GB
C18_I_TCR_S17_L003_R1_001.fastq.gz OTHER 4.6 GB
C18_pBMC_10x_S21_L001_R1_001.fastq.gz RNA-Seq 112.4 MB
C18_pBMC_10x_S21_L004_R1_001.fastq.gz RNA-Seq 166.2 MB
C18_pBMC_10x_S21_L005_R1_001.fastq.gz RNA-Seq 162.2 MB
C18_pBMC_10x_S21_L006_R1_001.fastq.gz RNA-Seq 163.1 MB
C18_pBMC_10x_S22_L001_R1_001.fastq.gz RNA-Seq 103.3 MB
C18_pBMC_10x_S22_L004_R1_001.fastq.gz RNA-Seq 149.7 MB
C18_pBMC_10x_S22_L005_R1_001.fastq.gz RNA-Seq 146.2 MB
C18_pBMC_10x_S22_L006_R1_001.fastq.gz RNA-Seq 147.6 MB
C18_pBMC_10x_S23_L001_R1_001.fastq.gz RNA-Seq 101.4 MB
C18_pBMC_10x_S23_L004_R1_001.fastq.gz RNA-Seq 142.3 MB
C18_pBMC_10x_S23_L005_R1_001.fastq.gz RNA-Seq 138.8 MB
C18_pBMC_10x_S23_L006_R1_001.fastq.gz RNA-Seq 140.3 MB
C18_pBMC_10x_S24_L001_R1_001.fastq.gz RNA-Seq 97.2 MB
C18_pBMC_10x_S24_L004_R1_001.fastq.gz RNA-Seq 139.4 MB
C18_pBMC_10x_S24_L005_R1_001.fastq.gz RNA-Seq 136.0 MB
C18_pBMC_10x_S24_L006_R1_001.fastq.gz RNA-Seq 137.6 MB
C18_pBMC_BCR_S15_L003_R1_001.fastq.gz OTHER 8.7 GB
C18_pBMC_TCR_S19_L003_R1_001.fastq.gz OTHER 5.2 GB
C18_R_10x_S17_L001_R1_001.fastq.gz RNA-Seq 138.9 MB
C18_R_10x_S17_L004_R1_001.fastq.gz RNA-Seq 200.8 MB
C18_R_10x_S17_L005_R1_001.fastq.gz RNA-Seq 195.9 MB
C18_R_10x_S17_L006_R1_001.fastq.gz RNA-Seq 198.0 MB
C18_R_10x_S18_L001_R1_001.fastq.gz RNA-Seq 972.8 KB
C18_R_10x_S18_L004_R1_001.fastq.gz RNA-Seq 1.4 MB
C18_R_10x_S18_L005_R1_001.fastq.gz RNA-Seq 1.3 MB
C18_R_10x_S18_L006_R1_001.fastq.gz RNA-Seq 1.3 MB
C18_R_10x_S19_L001_R1_001.fastq.gz RNA-Seq 115.4 MB
C18_R_10x_S19_L004_R1_001.fastq.gz RNA-Seq 168.9 MB
C18_R_10x_S19_L005_R1_001.fastq.gz RNA-Seq 165.5 MB
C18_R_10x_S19_L006_R1_001.fastq.gz RNA-Seq 166.3 MB
C18_R_10x_S20_L001_R1_001.fastq.gz RNA-Seq 168.3 MB
C18_R_10x_S20_L004_R1_001.fastq.gz RNA-Seq 249.4 MB
C18_R_10x_S20_L005_R1_001.fastq.gz RNA-Seq 244.2 MB
C18_R_10x_S20_L006_R1_001.fastq.gz RNA-Seq 246.1 MB
C18_R_BCR_S14_L003_R1_001.fastq.gz OTHER 4.4 GB
C18_R_TCR_S18_L003_R1_001.fastq.gz OTHER 4.6 GB
C19_ileum_Control_19_ileum_S21_L005_R1_001.fastq.gz RNA-Seq 919.6 MB
C19_ileum_Control_19_ileum_S22_L005_R1_001.fastq.gz RNA-Seq 1.0 GB
C19_ileum_Control_19_ileum_S23_L005_R1_001.fastq.gz RNA-Seq 691.2 MB
C19_ileum_Control_19_ileum_S24_L005_R1_001.fastq.gz RNA-Seq 1.3 GB
C19_ileum_S5_L005_R1_001.fastq.gz RNA-Seq 561.9 MB
C19_ileum_S6_L005_R1_001.fastq.gz RNA-Seq 624.6 MB
C19_ileum_S7_L005_R1_001.fastq.gz RNA-Seq 421.7 MB
C19_ileum_S8_L005_R1_001.fastq.gz RNA-Seq 778.2 MB
C19_pbmc_control_19_pBMC_S25_L005_R1_001.fastq.gz RNA-Seq 1.0 GB
C19_pbmc_control_19_pBMC_S26_L005_R1_001.fastq.gz RNA-Seq 748.0 MB
C19_pbmc_control_19_pBMC_S27_L005_R1_001.fastq.gz RNA-Seq 566.6 MB
C19_pbmc_control_19_pBMC_S28_L005_R1_001.fastq.gz RNA-Seq 650.1 MB
C19_pBMC_S1_L005_R1_001.fastq.gz RNA-Seq 815.4 MB
C19_pBMC_S2_L005_R1_001.fastq.gz RNA-Seq 585.3 MB
C19_pBMC_S3_L005_R1_001.fastq.gz RNA-Seq 447.8 MB
C19_pBMC_S4_L005_R1_001.fastq.gz RNA-Seq 512.6 MB
C19_rectum_control_19_rectum_S29_L005_R1_001.fastq.gz RNA-Seq 1.7 GB
C19_rectum_control_19_rectum_S30_L005_R1_001.fastq.gz RNA-Seq 961.8 MB
C19_rectum_control_19_rectum_S31_L005_R1_001.fastq.gz RNA-Seq 1016.0 MB
C19_rectum_control_19_rectum_S32_L005_R1_001.fastq.gz RNA-Seq 1.4 GB
C19_rectum_S10_L005_R1_001.fastq.gz RNA-Seq 446.2 MB
C19_rectum_S11_L005_R1_001.fastq.gz RNA-Seq 468.9 MB
C19_rectum_S12_L005_R1_001.fastq.gz RNA-Seq 661.1 MB
C19_rectum_S9_L005_R1_001.fastq.gz RNA-Seq 811.5 MB
C21_ileum_Control_21_ileum_S17_L005_R1_001.fastq.gz RNA-Seq 974.7 MB
C21_ileum_Control_21_ileum_S18_L005_R1_001.fastq.gz RNA-Seq 562.9 MB
C21_ileum_Control_21_ileum_S19_L005_R1_001.fastq.gz RNA-Seq 700.6 MB
C21_ileum_Control_21_ileum_S20_L005_R1_001.fastq.gz RNA-Seq 766.1 MB
C21_ileum_S29_L006_R1_001.fastq.gz RNA-Seq 754.5 MB
C21_ileum_S30_L006_R1_001.fastq.gz RNA-Seq 440.4 MB
C21_ileum_S31_L006_R1_001.fastq.gz RNA-Seq 546.6 MB
C21_ileum_S32_L006_R1_001.fastq.gz RNA-Seq 598.0 MB
C21_pBMC_S25_L005_R1_001.fastq.gz RNA-Seq 588.6 MB
C21_pBMC_S26_L005_R1_001.fastq.gz RNA-Seq 587.7 MB
C21_pBMC_S27_L005_R1_001.fastq.gz RNA-Seq 536.8 MB
C21_pBMC_S28_L005_R1_001.fastq.gz RNA-Seq 762.3 MB
C21_rectum_S33_L006_R1_001.fastq.gz RNA-Seq 932.3 MB
C21_rectum_S34_L006_R1_001.fastq.gz RNA-Seq 464.2 MB
C21_rectum_S35_L006_R1_001.fastq.gz RNA-Seq 686.2 MB
C21_rectum_S36_L006_R1_001.fastq.gz RNA-Seq 494.8 MB
C30_ileum_control_30_ileum_S33_L005_R1_001.fastq.gz RNA-Seq 707.7 MB
C30_ileum_control_30_ileum_S34_L005_R1_001.fastq.gz RNA-Seq 1.0 GB
C30_ileum_control_30_ileum_S35_L005_R1_001.fastq.gz RNA-Seq 649.5 MB
C30_ileum_control_30_ileum_S36_L005_R1_001.fastq.gz RNA-Seq 658.9 MB
C30_ileum_S41_L006_R1_001.fastq.gz RNA-Seq 599.3 MB
C30_ileum_S42_L006_R1_001.fastq.gz RNA-Seq 864.9 MB
C30_ileum_S43_L006_R1_001.fastq.gz RNA-Seq 549.8 MB
C30_ileum_S44_L006_R1_001.fastq.gz RNA-Seq 556.4 MB
C30_pbmc_S37_L006_R1_001.fastq.gz RNA-Seq 649.7 MB
C30_pbmc_S38_L006_R1_001.fastq.gz RNA-Seq 419.6 MB
C30_pbmc_S39_L006_R1_001.fastq.gz RNA-Seq 632.7 MB
C30_pbmc_S40_L006_R1_001.fastq.gz RNA-Seq 770.1 MB
C30_rectum_control_30_rectum_S1_L004_R1_001.fastq.gz RNA-Seq 1.3 GB
C30_rectum_control_30_rectum_S2_L004_R1_001.fastq.gz RNA-Seq 1.4 GB
C30_rectum_control_30_rectum_S3_L004_R1_001.fastq.gz RNA-Seq 1.8 GB
C30_rectum_control_30_rectum_S4_L004_R1_001.fastq.gz RNA-Seq 2.3 GB
C30_rectum_S45_L006_R1_001.fastq.gz RNA-Seq 481.8 MB
C30_rectum_S46_L006_R1_001.fastq.gz RNA-Seq 499.1 MB
C30_rectum_S47_L006_R1_001.fastq.gz RNA-Seq 647.3 MB
C30_rectum_S48_L006_R1_001.fastq.gz RNA-Seq 826.5 MB
C33_ileum_S17_L005_R1_001.fastq.gz RNA-Seq 728.0 MB
C33_ileum_S18_L005_R1_001.fastq.gz RNA-Seq 715.2 MB
C33_ileum_S19_L005_R1_001.fastq.gz RNA-Seq 809.3 MB
C33_ileum_S20_L005_R1_001.fastq.gz RNA-Seq 881.4 MB
C33_pBMC_S13_L005_R1_001.fastq.gz RNA-Seq 830.5 MB
C33_pBMC_S14_L005_R1_001.fastq.gz RNA-Seq 310.2 MB
C33_pBMC_S15_L005_R1_001.fastq.gz RNA-Seq 814.1 MB
C33_pBMC_S16_L005_R1_001.fastq.gz RNA-Seq 496.9 MB
C9RectumBCR_S1_L001_R1_001.fastq.gz OTHER 36.5 MB
C9_Rectum_BCR_S1_L003_R1_001.fastq.gz OTHER 4.3 GB
C9RectumBCR_S2_L001_R1_001.fastq.gz OTHER 30.7 MB
C9RectumBCR_S3_L001_R1_001.fastq.gz OTHER 36.8 MB
C9RectumBCR_S4_L001_R1_001.fastq.gz OTHER 33.1 MB
C9RectumSC_S53_L007_R1_001.fastq.gz RNA-Seq 1.2 GB
C9RectumSC_S54_L007_R1_001.fastq.gz RNA-Seq 1.3 GB
C9RectumSC_S55_L007_R1_001.fastq.gz RNA-Seq 1.3 GB
C9RectumSC_S56_L007_R1_001.fastq.gz RNA-Seq 1.6 GB
C9RectumTCR_S17_L001_R1_001.fastq.gz OTHER 99.6 MB
C9RectumTCR_S18_L001_R1_001.fastq.gz OTHER 91.5 MB
C9RectumTCR_S19_L001_R1_001.fastq.gz OTHER 100.9 MB
C9RectumTCR_S20_L001_R1_001.fastq.gz OTHER 81.1 MB
C9_Rectum_TCR_S2_L003_R1_001.fastq.gz OTHER 17.0 MB
SRR8478397_GSM3576396 RNA-Seq 1.2 GB
SRR8478398_GSM3576396 RNA-Seq 1.3 GB
SRR8478399_GSM3576396 RNA-Seq 1.3 GB
SRR8478400_GSM3576396 RNA-Seq 1.6 GB
SRR8478401_GSM3576397 RNA-Seq 550.0 MB
SRR8478402_GSM3576397 RNA-Seq 474.0 MB
SRR8478403_GSM3576397 RNA-Seq 462.0 MB
SRR8478404_GSM3576397 RNA-Seq 463.0 MB
SRR8478405_GSM3576398 RNA-Seq 1.1 GB
SRR8478406_GSM3576398 RNA-Seq 393.0 MB
SRR8478407_GSM3576398 RNA-Seq 573.0 MB
SRR8478408_GSM3576398 RNA-Seq 579.0 MB
SRR8478409_GSM3576399 RNA-Seq 1.0 GB
SRR8478410_GSM3576399 RNA-Seq 517.0 MB
SRR8478411_GSM3576399 RNA-Seq 153.0 MB
SRR8478412_GSM3576399 RNA-Seq 970.0 MB
SRR8478413_GSM3576400 RNA-Seq 912.0 MB
SRR8478414_GSM3576400 RNA-Seq 319.0 MB
SRR8478415_GSM3576400 RNA-Seq 639.0 MB
SRR8478416_GSM3576400 RNA-Seq 611.0 MB
SRR8478417_GSM3576401 RNA-Seq 701.0 MB
SRR8478418_GSM3576401 RNA-Seq 565.0 MB
SRR8478419_GSM3576401 RNA-Seq 709.0 MB
SRR8478420_GSM3576401 RNA-Seq 780.0 MB
SRR8478421_GSM3576401 RNA-Seq 524.0 MB
SRR8478422_GSM3576401 RNA-Seq 419.0 MB
SRR8478423_GSM3576401 RNA-Seq 524.0 MB
SRR8478424_GSM3576401 RNA-Seq 581.0 MB
SRR8478425_GSM3576402 RNA-Seq 477.0 MB
SRR8478426_GSM3576402 RNA-Seq 557.0 MB
SRR8478427_GSM3576402 RNA-Seq 902.0 MB
SRR8478428_GSM3576402 RNA-Seq 897.0 MB
SRR8478429_GSM3576403 RNA-Seq 836.0 MB
SRR8478430_GSM3576403 RNA-Seq 483.0 MB
SRR8478431_GSM3576403 RNA-Seq 711.0 MB
SRR8478432_GSM3576403 RNA-Seq 1007.0 MB
SRR8478433_GSM3576404 RNA-Seq 855.0 MB
SRR8478434_GSM3576404 RNA-Seq 834.0 MB
SRR8478435_GSM3576404 RNA-Seq 753.0 MB
SRR8478436_GSM3576404 RNA-Seq 612.0 MB
SRR8478437_GSM3576405 RNA-Seq 704.0 MB
SRR8478438_GSM3576405 RNA-Seq 802.0 MB
SRR8478439_GSM3576405 RNA-Seq 631.0 MB
SRR8478440_GSM3576405 RNA-Seq 865.0 MB
SRR8478441_GSM3576406 RNA-Seq 259.0 MB
SRR8478442_GSM3576406 RNA-Seq 371.0 MB
SRR8478443_GSM3576406 RNA-Seq 363.0 MB
SRR8478444_GSM3576406 RNA-Seq 366.0 MB
SRR8478445_GSM3576406 RNA-Seq 163.0 MB
SRR8478446_GSM3576406 RNA-Seq 231.0 MB
SRR8478447_GSM3576406 RNA-Seq 225.0 MB
SRR8478448_GSM3576406 RNA-Seq 228.0 MB
SRR8478449_GSM3576406 RNA-Seq 376.0 MB
SRR8478450_GSM3576406 RNA-Seq 367.0 MB
SRR8478451_GSM3576406 RNA-Seq 371.0 MB
SRR8478452_GSM3576406 RNA-Seq 38.0 MB
SRR8478453_GSM3576406 RNA-Seq 54.0 MB
SRR8478454_GSM3576406 RNA-Seq 53.0 MB
SRR8478455_GSM3576406 RNA-Seq 53.0 MB
SRR8478456_GSM3576406 RNA-Seq 247.0 MB
SRR8478457_GSM3576407 RNA-Seq 138.0 MB
SRR8478458_GSM3576407 RNA-Seq 168.0 MB
SRR8478459_GSM3576407 RNA-Seq 165.0 MB
SRR8478460_GSM3576407 RNA-Seq 166.0 MB
SRR8478461_GSM3576407 RNA-Seq 168.0 MB
SRR8478462_GSM3576407 RNA-Seq 249.0 MB
SRR8478463_GSM3576407 RNA-Seq 244.0 MB
SRR8478464_GSM3576407 RNA-Seq 246.0 MB
SRR8478465_GSM3576407 RNA-Seq 200.0 MB
SRR8478466_GSM3576407 RNA-Seq 195.0 MB
SRR8478467_GSM3576407 RNA-Seq 197.0 MB
SRR8478468_GSM3576407 RNA-Seq
SRR8478469_GSM3576407 RNA-Seq 1.0 MB
SRR8478470_GSM3576407 RNA-Seq 1.0 MB
SRR8478471_GSM3576407 RNA-Seq 1.0 MB
SRR8478472_GSM3576407 RNA-Seq 115.0 MB
SRR8478473_GSM3576408 RNA-Seq 1.7 GB
SRR8478474_GSM3576408 RNA-Seq 961.0 MB
SRR8478475_GSM3576408 RNA-Seq 1015.0 MB
SRR8478476_GSM3576408 RNA-Seq 1.4 GB
SRR8478477_GSM3576408 RNA-Seq 446.0 MB
SRR8478478_GSM3576408 RNA-Seq 468.0 MB
SRR8478479_GSM3576408 RNA-Seq 661.0 MB
SRR8478480_GSM3576408 RNA-Seq 811.0 MB
SRR8478481_GSM3576409 RNA-Seq 932.0 MB
SRR8478482_GSM3576409 RNA-Seq 464.0 MB
SRR8478483_GSM3576409 RNA-Seq 686.0 MB
SRR8478484_GSM3576409 RNA-Seq 494.0 MB
SRR8478485_GSM3576410 RNA-Seq 1.3 GB
SRR8478486_GSM3576410 RNA-Seq 1.4 GB
SRR8478487_GSM3576410 RNA-Seq 1.8 GB
SRR8478488_GSM3576410 RNA-Seq 2.3 GB
SRR8478489_GSM3576410 RNA-Seq 481.0 MB
SRR8478490_GSM3576410 RNA-Seq 499.0 MB
SRR8478491_GSM3576410 RNA-Seq 647.0 MB
SRR8478492_GSM3576410 RNA-Seq 826.0 MB
SRR8478493_GSM3576411 RNA-Seq 509.0 MB
SRR8478494_GSM3576411 RNA-Seq 417.0 MB
SRR8478495_GSM3576411 RNA-Seq 422.0 MB
SRR8478496_GSM3576411 RNA-Seq 538.0 MB
SRR8478497_GSM3576412 RNA-Seq 1.6 GB
SRR8478498_GSM3576412 RNA-Seq 1.5 GB
SRR8478499_GSM3576412 RNA-Seq 1.4 GB
SRR8478500_GSM3576412 RNA-Seq 1.4 GB
SRR8478501_GSM3576412 RNA-Seq 838.0 MB
SRR8478502_GSM3576412 RNA-Seq 789.0 MB
SRR8478503_GSM3576412 RNA-Seq 711.0 MB
SRR8478504_GSM3576412 RNA-Seq 717.0 MB
SRR8478505_GSM3576413 RNA-Seq 475.0 MB
SRR8478506_GSM3576413 RNA-Seq 911.0 MB
SRR8478507_GSM3576413 RNA-Seq 763.0 MB
SRR8478508_GSM3576413 RNA-Seq 507.0 MB
SRR8478509_GSM3576414 RNA-Seq 761.0 MB
SRR8478510_GSM3576414 RNA-Seq 464.0 MB
SRR8478511_GSM3576414 RNA-Seq 635.0 MB
SRR8478512_GSM3576414 RNA-Seq 521.0 MB
SRR8478513_GSM3576415 RNA-Seq 683.0 MB
SRR8478514_GSM3576415 RNA-Seq 325.0 MB
SRR8478515_GSM3576415 RNA-Seq 1019.0 MB
SRR8478516_GSM3576415 RNA-Seq 616.0 MB
SRR8478517_GSM3576415 RNA-Seq 301.0 MB
SRR8478518_GSM3576415 RNA-Seq 937.0 MB
SRR8478519_GSM3576415 RNA-Seq 560.0 MB
SRR8478520_GSM3576415 RNA-Seq 622.0 MB
SRR8478521_GSM3576416 RNA-Seq 528.0 MB
SRR8478522_GSM3576416 RNA-Seq 351.0 MB
SRR8478523_GSM3576416 RNA-Seq 864.0 MB
SRR8478524_GSM3576416 RNA-Seq 835.0 MB
SRR8478525_GSM3576417 RNA-Seq 9.0 MB
SRR8478526_GSM3576417 RNA-Seq 362.0 MB
SRR8478527_GSM3576417 RNA-Seq 495.0 MB
SRR8478528_GSM3576417 RNA-Seq 546.0 MB
SRR8478529_GSM3576418 RNA-Seq 809.0 MB
SRR8478530_GSM3576418 RNA-Seq 912.0 MB
SRR8478531_GSM3576418 RNA-Seq 150.0 MB
SRR8478532_GSM3576418 RNA-Seq 738.0 MB
SRR8478533_GSM3576419 RNA-Seq 620.0 MB
SRR8478534_GSM3576419 RNA-Seq 797.0 MB
SRR8478535_GSM3576419 RNA-Seq 690.0 MB
SRR8478536_GSM3576419 RNA-Seq 841.0 MB
SRR8478537_GSM3576420 RNA-Seq 498.0 MB
SRR8478538_GSM3576420 RNA-Seq 783.0 MB
SRR8478539_GSM3576420 RNA-Seq 766.0 MB
SRR8478540_GSM3576420 RNA-Seq 771.0 MB
SRR8478541_GSM3576420 RNA-Seq 349.0 MB
SRR8478542_GSM3576420 RNA-Seq 502.0 MB
SRR8478543_GSM3576420 RNA-Seq 492.0 MB
SRR8478544_GSM3576420 RNA-Seq 496.0 MB
SRR8478545_GSM3576420 RNA-Seq 725.0 MB
SRR8478546_GSM3576420 RNA-Seq 709.0 MB
SRR8478547_GSM3576420 RNA-Seq 712.0 MB
SRR8478548_GSM3576420 RNA-Seq 517.0 MB
SRR8478549_GSM3576420 RNA-Seq 748.0 MB
SRR8478550_GSM3576420 RNA-Seq 733.0 MB
SRR8478551_GSM3576420 RNA-Seq 739.0 MB
SRR8478552_GSM3576420 RNA-Seq 545.0 MB
SRR8478553_GSM3576421 RNA-Seq 112.0 MB
SRR8478554_GSM3576421 RNA-Seq 142.0 MB
SRR8478555_GSM3576421 RNA-Seq 138.0 MB
SRR8478556_GSM3576421 RNA-Seq 140.0 MB
SRR8478557_GSM3576421 RNA-Seq 97.0 MB
SRR8478558_GSM3576421 RNA-Seq 139.0 MB
SRR8478559_GSM3576421 RNA-Seq 136.0 MB
SRR8478560_GSM3576421 RNA-Seq 137.0 MB
SRR8478561_GSM3576421 RNA-Seq 166.0 MB
SRR8478562_GSM3576421 RNA-Seq 162.0 MB
SRR8478563_GSM3576421 RNA-Seq 163.0 MB
SRR8478564_GSM3576421 RNA-Seq 103.0 MB
SRR8478565_GSM3576421 RNA-Seq 149.0 MB
SRR8478566_GSM3576421 RNA-Seq 146.0 MB
SRR8478567_GSM3576421 RNA-Seq 147.0 MB
SRR8478568_GSM3576421 RNA-Seq 101.0 MB
SRR8478569_GSM3576422 RNA-Seq 1.0 GB
SRR8478570_GSM3576422 RNA-Seq 748.0 MB
SRR8478571_GSM3576422 RNA-Seq 566.0 MB
SRR8478572_GSM3576422 RNA-Seq 650.0 MB
SRR8478573_GSM3576422 RNA-Seq 815.0 MB
SRR8478574_GSM3576422 RNA-Seq 585.0 MB
SRR8478575_GSM3576422 RNA-Seq 447.0 MB
SRR8478576_GSM3576422 RNA-Seq 512.0 MB
SRR8478577_GSM3576423 RNA-Seq 588.0 MB
SRR8478578_GSM3576423 RNA-Seq 587.0 MB
SRR8478579_GSM3576423 RNA-Seq 536.0 MB
SRR8478580_GSM3576423 RNA-Seq 762.0 MB
SRR8478581_GSM3576424 RNA-Seq 649.0 MB
SRR8478582_GSM3576424 RNA-Seq 419.0 MB
SRR8478583_GSM3576424 RNA-Seq 632.0 MB
SRR8478584_GSM3576424 RNA-Seq 770.0 MB
SRR8478585_GSM3576425 RNA-Seq 830.0 MB
SRR8478586_GSM3576425 RNA-Seq 310.0 MB
SRR8478587_GSM3576425 RNA-Seq 814.0 MB
SRR8478588_GSM3576425 RNA-Seq 496.0 MB
SRR8478589_GSM3576426 RNA-Seq 128.0 MB
SRR8478590_GSM3576426 RNA-Seq 361.0 MB
SRR8478591_GSM3576426 RNA-Seq 351.0 MB
SRR8478592_GSM3576426 RNA-Seq 356.0 MB
SRR8478593_GSM3576426 RNA-Seq 119.0 MB
SRR8478594_GSM3576426 RNA-Seq 169.0 MB
SRR8478595_GSM3576426 RNA-Seq 165.0 MB
SRR8478596_GSM3576426 RNA-Seq 167.0 MB
SRR8478597_GSM3576426 RNA-Seq 192.0 MB
SRR8478598_GSM3576426 RNA-Seq 188.0 MB
SRR8478599_GSM3576426 RNA-Seq 189.0 MB
SRR8478600_GSM3576426 RNA-Seq 117.0 MB
SRR8478601_GSM3576426 RNA-Seq 166.0 MB
SRR8478602_GSM3576426 RNA-Seq 162.0 MB
SRR8478603_GSM3576426 RNA-Seq 163.0 MB
SRR8478604_GSM3576426 RNA-Seq 253.0 MB
SRR8478605_GSM3576427 RNA-Seq 208.0 MB
SRR8478606_GSM3576427 RNA-Seq 272.0 MB
SRR8478607_GSM3576427 RNA-Seq 266.0 MB
SRR8478608_GSM3576427 RNA-Seq 269.0 MB
SRR8478609_GSM3576427 RNA-Seq 241.0 MB
SRR8478610_GSM3576427 RNA-Seq 368.0 MB
SRR8478611_GSM3576427 RNA-Seq 359.0 MB
SRR8478612_GSM3576427 RNA-Seq 364.0 MB
SRR8478613_GSM3576427 RNA-Seq 303.0 MB
SRR8478614_GSM3576427 RNA-Seq 296.0 MB
SRR8478615_GSM3576427 RNA-Seq 299.0 MB
SRR8478616_GSM3576427 RNA-Seq 287.0 MB
SRR8478617_GSM3576427 RNA-Seq 419.0 MB
SRR8478618_GSM3576427 RNA-Seq 408.0 MB
SRR8478619_GSM3576427 RNA-Seq 412.0 MB
SRR8478620_GSM3576427 RNA-Seq 192.0 MB
SRR8478621_GSM3576428 RNA-Seq 919.0 MB
SRR8478622_GSM3576428 RNA-Seq 1.0 GB
SRR8478623_GSM3576428 RNA-Seq 691.0 MB
SRR8478624_GSM3576428 RNA-Seq 1.3 GB
SRR8478625_GSM3576428 RNA-Seq 561.0 MB
SRR8478626_GSM3576428 RNA-Seq 624.0 MB
SRR8478627_GSM3576428 RNA-Seq 421.0 MB
SRR8478628_GSM3576428 RNA-Seq 778.0 MB
SRR8478629_GSM3576429 RNA-Seq 974.0 MB
SRR8478630_GSM3576429 RNA-Seq 562.0 MB
SRR8478631_GSM3576429 RNA-Seq 700.0 MB
SRR8478632_GSM3576429 RNA-Seq 766.0 MB
SRR8478633_GSM3576429 RNA-Seq 754.0 MB
SRR8478634_GSM3576429 RNA-Seq 440.0 MB
SRR8478635_GSM3576429 RNA-Seq 546.0 MB
SRR8478636_GSM3576429 RNA-Seq 597.0 MB
SRR8478637_GSM3576430 RNA-Seq 707.0 MB
SRR8478638_GSM3576430 RNA-Seq 1.0 GB
SRR8478639_GSM3576430 RNA-Seq 649.0 MB
SRR8478640_GSM3576430 RNA-Seq 658.0 MB
SRR8478641_GSM3576430 RNA-Seq 599.0 MB
SRR8478642_GSM3576430 RNA-Seq 864.0 MB
SRR8478643_GSM3576430 RNA-Seq 549.0 MB
SRR8478644_GSM3576430 RNA-Seq 556.0 MB
SRR8478645_GSM3576431 RNA-Seq 728.0 MB
SRR8478646_GSM3576431 RNA-Seq 715.0 MB
SRR8478647_GSM3576431 RNA-Seq 809.0 MB
SRR8478648_GSM3576431 RNA-Seq 881.0 MB
SRR8478649_GSM3576432 OTHER 36.0 MB
SRR8478650_GSM3576432 OTHER 4.3 GB
SRR8478651_GSM3576432 OTHER 30.0 MB
SRR8478652_GSM3576432 OTHER 36.0 MB
SRR8478653_GSM3576432 OTHER 33.0 MB
SRR8478654_GSM3576433 OTHER 48.0 MB
SRR8478655_GSM3576433 OTHER 35.0 MB
SRR8478656_GSM3576433 OTHER 49.0 MB
SRR8478657_GSM3576433 OTHER 48.6 GB
SRR8478658_GSM3576433 OTHER 60.0 MB
SRR8478659_GSM3576434 OTHER 5.6 GB
SRR8478660_GSM3576434 OTHER 5.6 GB
SRR8478661_GSM3576435 OTHER 4.2 GB
SRR8478662_GSM3576435 OTHER 4.1 GB
SRR8478663_GSM3576436 OTHER 9.9 GB
SRR8478664_GSM3576436 OTHER 9.9 GB
SRR8478665_GSM3576437 OTHER 4.6 GB
SRR8478666_GSM3576437 OTHER 4.6 GB
SRR8478667_GSM3576438 OTHER 4.2 GB
SRR8478668_GSM3576438 OTHER 4.2 GB
SRR8478669_GSM3576439 OTHER 4.6 GB
SRR8478670_GSM3576439 OTHER 4.6 GB
SRR8478671_GSM3576440 OTHER 4.4 GB
SRR8478672_GSM3576440 OTHER 4.3 GB
SRR8478673_GSM3576441 OTHER 2.1 GB
SRR8478674_GSM3576442 OTHER 4.4 GB
SRR8478675_GSM3576443 OTHER 3.5 GB
SRR8478676_GSM3576443 OTHER 3.5 GB
SRR8478677_GSM3576444 OTHER 3.8 GB
SRR8478678_GSM3576444 OTHER 3.8 GB
SRR8478679_GSM3576445 OTHER 3.9 GB
SRR8478680_GSM3576445 OTHER 3.9 GB
SRR8478681_GSM3576446 OTHER 1.0 MB
SRR8478682_GSM3576446 OTHER 3.0 MB
SRR8478683_GSM3576446 OTHER 2.0 MB
SRR8478684_GSM3576446 OTHER 1.0 MB
SRR8478685_GSM3576446 OTHER 18.6 GB
SRR8478686_GSM3576447 OTHER 4.6 GB
SRR8478687_GSM3576447 OTHER 4.5 GB
SRR8478688_GSM3576448 OTHER 3.6 GB
SRR8478689_GSM3576448 OTHER 3.6 GB
SRR8478690_GSM3576449 OTHER 3.6 GB
SRR8478691_GSM3576449 OTHER 3.6 GB
SRR8478692_GSM3576450 OTHER 4.1 GB
SRR8478693_GSM3576450 OTHER 4.1 GB
SRR8478694_GSM3576451 OTHER 4.7 GB
SRR8478695_GSM3576451 OTHER 4.6 GB
SRR8478696_GSM3576452 OTHER 2.2 GB
SRR8478697_GSM3576452 OTHER 2.2 GB
SRR8478698_GSM3576453 OTHER 4.8 GB
SRR8478699_GSM3576453 OTHER 4.8 GB
SRR8478700_GSM3576454 OTHER 3.2 GB
SRR8478701_GSM3576454 OTHER 3.2 GB
SRR8478702_GSM3576455 OTHER 4.7 GB
SRR8478703_GSM3576456 OTHER 8.7 GB
SRR8478704_GSM3576457 OTHER 5.2 GB
SRR8478705_GSM3576457 OTHER 5.2 GB
SRR8478706_GSM3576458 OTHER 3.9 GB
SRR8478707_GSM3576458 OTHER 3.9 GB
SRR8478708_GSM3576459 OTHER 4.0 GB
SRR8478709_GSM3576459 OTHER 4.0 GB
SRR8478710_GSM3576460 OTHER 4.3 GB
SRR8478711_GSM3576461 OTHER 8.9 GB
SRR8478712_GSM3576462 OTHER 3.8 GB
SRR8478713_GSM3576462 OTHER 3.8 GB
SRR8478714_GSM3576463 OTHER 3.7 GB
SRR8478715_GSM3576463 OTHER 3.7 GB
SRR8478716_GSM3576464 OTHER 3.6 GB
SRR8478717_GSM3576464 OTHER 3.6 GB
SRR8478718_GSM3576465 OTHER 99.0 MB
SRR8478719_GSM3576465 OTHER 91.0 MB
SRR8478720_GSM3576465 OTHER 100.0 MB
SRR8478721_GSM3576465 OTHER 81.0 MB
SRR8478722_GSM3576465 OTHER 17.0 MB
SRR8478723_GSM3576466 OTHER 14.0 MB
SRR8478724_GSM3576466 OTHER 8.0 MB
SRR8478725_GSM3576466 OTHER 10.0 MB
SRR8478726_GSM3576466 OTHER 8.0 MB
SRR8478727_GSM3576466 OTHER 12.1 GB
SRR8478728_GSM3576467 OTHER 3.9 GB
SRR8478729_GSM3576467 OTHER 3.9 GB
SRR8478730_GSM3576468 OTHER 7.8 GB
SRR8478731_GSM3576468 OTHER 7.8 GB
SRR8478732_GSM3576469 OTHER 3.9 GB
SRR8478733_GSM3576469 OTHER 3.9 GB
SRR8478734_GSM3576470 OTHER 3.4 GB
SRR8478735_GSM3576470 OTHER 3.4 GB
SRR8478736_GSM3576471 OTHER 3.5 GB
SRR8478737_GSM3576471 OTHER 3.5 GB
SRR8478738_GSM3576472 OTHER 4.3 GB
SRR8478739_GSM3576472 OTHER 4.3 GB
SRR8478740_GSM3576473 OTHER 4.4 GB
SRR8478741_GSM3576473 OTHER 4.4 GB
SRR8478742_GSM3576474 OTHER 3.7 GB
SRR8478743_GSM3576474 OTHER 3.7 GB
SRR8478744_GSM3576475 OTHER 7.8 GB
SRR8478745_GSM3576476 OTHER 4.6 GB
SRR8478746_GSM3576477 OTHER 3.7 GB
SRR8478747_GSM3576477 OTHER 3.7 GB
SRR8478748_GSM3576478 OTHER 3.7 GB
SRR8478749_GSM3576478 OTHER 3.8 GB
SRR8478750_GSM3576479 OTHER 3.5 GB
SRR8478751_GSM3576479 OTHER 3.5 GB
SRR8478752_GSM3576480 OTHER 17.0 MB
SRR8478753_GSM3576480 OTHER 16.0 MB
SRR8478754_GSM3576480 OTHER 20.0 MB
SRR8478755_GSM3576480 OTHER 11.0 MB
SRR8478756_GSM3576480 OTHER 6.3 GB
SRR8478757_GSM3576481 OTHER 3.1 GB
SRR8478758_GSM3576481 OTHER 3.1 GB
SRR8478759_GSM3576482 OTHER 4.8 GB
SRR8478760_GSM3576482 OTHER 4.8 GB
SRR8478761_GSM3576483 OTHER 3.7 GB
SRR8478762_GSM3576483 OTHER 3.7 GB
SRR8478763_GSM3576484 OTHER 3.1 GB
SRR8478764_GSM3576484 OTHER 3.1 GB
SRR8478765_GSM3576485 OTHER 3.6 GB
SRR8478766_GSM3576485 OTHER 3.6 GB
SRR8478767_GSM3576486 OTHER 4.0 GB
SRR8478768_GSM3576486 OTHER 4.0 GB
SRR8478769_GSM3576487 OTHER 3.3 GB
SRR8478770_GSM3576487 OTHER 3.3 GB
SRR8478771_GSM3576488 OTHER 3.8 GB
SRR8478772_GSM3576488 OTHER 3.8 GB
SRR8478773_GSM3576489 OTHER 4.6 GB
SRR8478774_GSM3576490 OTHER 5.2 GB
SRR8478775_GSM3576491 OTHER 4.6 GB
SRR8478776_GSM3576491 OTHER 4.6 GB
SRR8478777_GSM3576492 OTHER 3.1 GB
SRR8478778_GSM3576492 OTHER 3.1 GB
SRR8478779 OTHER 4.2 GB
SRR8478779_GSM3576493 OTHER 4.2 GB
SRR8478780_GSM3576493 OTHER 4.2 GB
SRR8478781_GSM3576494 OTHER 5.8 GB
SRR8478782_GSM3576495 OTHER 4.6 GB
SRR8478783_GSM3576496 OTHER 3.2 GB
SRR8478784_GSM3576496 OTHER 3.3 GB
SRR8478785_GSM3576497 OTHER 3.3 GB
SRR8478786_GSM3576497 OTHER 3.3 GB
SRR8478787_GSM3576498 OTHER 3.5 GB
SRR8478788_GSM3576498 OTHER 3.5 GB
U34_pbmc_S49_L006_R1_001.fastq.gz RNA-Seq 683.5 MB
U34_pbmc_S50_L006_R1_001.fastq.gz RNA-Seq 325.7 MB
U34_pbmc_S51_L006_R1_001.fastq.gz RNA-Seq 1019.5 MB
U34_pbmc_S52_L006_R1_001.fastq.gz RNA-Seq 616.4 MB
U34_pBMC_ulcerative_colitis_34_pBMC_S10_L004_R1_001.fastq.gz RNA-Seq 301.4 MB
U34_pBMC_ulcerative_colitis_34_pBMC_S11_L004_R1_001.fastq.gz RNA-Seq 937.5 MB
U34_pBMC_ulcerative_colitis_34_pBMC_S12_L004_R1_001.fastq.gz RNA-Seq 560.9 MB
U34_pBMC_ulcerative_colitis_34_pBMC_S9_L004_R1_001.fastq.gz RNA-Seq 622.2 MB
U34_rectum_S53_L006_R1_001.fastq.gz RNA-Seq 701.6 MB
U34_rectum_S54_L006_R1_001.fastq.gz RNA-Seq 565.7 MB
U34_rectum_S55_L006_R1_001.fastq.gz RNA-Seq 709.6 MB
U34_rectum_S56_L006_R1_001.fastq.gz RNA-Seq 780.5 MB
U34_Rectum_Ulcerative_colitis_34_Rectum_S5_L004_R1_001.fast… RNA-Seq 524.8 MB
U34_Rectum_Ulcerative_colitis_34_Rectum_S6_L004_R1_001.fast… RNA-Seq 419.6 MB
U34_Rectum_Ulcerative_colitis_34_Rectum_S7_L004_R1_001.fast… RNA-Seq 524.2 MB
U34_Rectum_Ulcerative_colitis_34_Rectum_S8_L004_R1_001.fast… RNA-Seq 581.7 MB
U35_P_Ulcerative_colitis_35_pbmc_S1_L001_R1_001.fastq.gz RNA-Seq 528.6 MB
U35_P_Ulcerative_colitis_35_pbmc_S2_L001_R1_001.fastq.gz RNA-Seq 352.0 MB
U35_P_Ulcerative_colitis_35_pbmc_S3_L001_R1_001.fastq.gz RNA-Seq 864.5 MB
U35_P_Ulcerative_colitis_35_pbmc_S4_L001_R1_001.fastq.gz RNA-Seq 835.1 MB
U35_R_Ulcerative_colitis_35_rectum_S5_L001_R1_001.fastq.gz RNA-Seq 477.9 MB
U35_R_Ulcerative_colitis_35_rectum_S6_L001_R1_001.fastq.gz RNA-Seq 557.5 MB
U35_R_Ulcerative_colitis_35_rectum_S7_L001_R1_001.fastq.gz RNA-Seq 902.4 MB
U35_R_Ulcerative_colitis_35_rectum_S8_L001_R1_001.fastq.gz RNA-Seq 897.6 MB
U41_P_Ulcerative_colitis_41_pbmc_S10_L001_R1_001.fastq.gz RNA-Seq 9.8 MB
U41_P_Ulcerative_colitis_41_pbmc_S11_L001_R1_001.fastq.gz RNA-Seq 362.6 MB
U41_P_Ulcerative_colitis_41_pbmc_S12_L001_R1_001.fastq.gz RNA-Seq 495.9 MB
U41_P_Ulcerative_colitis_41_pbmc_S9_L001_R1_001.fastq.gz RNA-Seq 546.2 MB
U41_R_Ulcerative_colitis_41_rectum_S13_L001_R1_001.fastq.gz RNA-Seq 836.3 MB
U41_R_Ulcerative_colitis_41_rectum_S14_L001_R1_001.fastq.gz RNA-Seq 483.1 MB
U41_R_Ulcerative_colitis_41_rectum_S15_L001_R1_001.fastq.gz RNA-Seq 711.4 MB
U41_R_Ulcerative_colitis_41_rectum_S16_L001_R1_001.fastq.gz RNA-Seq 1007.8 MB
U44_pbmc_ulcerative_colitis_44_pbmc_S17_L001_R1_001.fastq.gz RNA-Seq 809.1 MB
U44_pbmc_ulcerative_colitis_44_pbmc_S18_L001_R1_001.fastq.gz RNA-Seq 912.8 MB
U44_pbmc_ulcerative_colitis_44_pbmc_S19_L001_R1_001.fastq.gz RNA-Seq 150.2 MB
U44_pbmc_ulcerative_colitis_44_pbmc_S20_L001_R1_001.fastq.gz RNA-Seq 738.4 MB
U44_rectum_ulcerative_coliis_44_rectm_S21_L001_R1_001.fastq… RNA-Seq 855.2 MB
U44_rectum_ulcerative_coliis_44_rectm_S22_L001_R1_001.fastq… RNA-Seq 834.3 MB
U44_rectum_ulcerative_coliis_44_rectm_S23_L001_R1_001.fastq… RNA-Seq 753.4 MB
U44_rectum_ulcerative_coliis_44_rectm_S24_L001_R1_001.fastq… RNA-Seq 612.2 MB
U45_pbmc_ulcerative_colitis_45_pBMC_S25_L001_R1_001.fastq.gz RNA-Seq 620.4 MB
U45_pbmc_ulcerative_colitis_45_pBMC_S26_L001_R1_001.fastq.gz RNA-Seq 797.3 MB
U45_pbmc_ulcerative_colitis_45_pBMC_S27_L001_R1_001.fastq.gz RNA-Seq 690.4 MB
U45_pbmc_ulcerative_colitis_45_pBMC_S28_L001_R1_001.fastq.gz RNA-Seq 841.9 MB
U45_R_ulcerative_colitis_45_rectum_S29_L002_R1_001.fastq.gz RNA-Seq 704.3 MB
U45_R_ulcerative_colitis_45_rectum_S30_L002_R1_001.fastq.gz RNA-Seq 802.6 MB
U45_R_ulcerative_colitis_45_rectum_S31_L002_R1_001.fastq.gz RNA-Seq 631.7 MB
U45_R_ulcerative_colitis_45_rectum_S32_L002_R1_001.fastq.gz RNA-Seq 865.2 MB
U4_pbmc_ulcerative_colitis_4_pbmc_S41_L002_R1_001.fastq.gz RNA-Seq 475.4 MB
U4_pbmc_ulcerative_colitis_4_pbmc_S42_L002_R1_001.fastq.gz RNA-Seq 911.6 MB
U4_pbmc_ulcerative_colitis_4_pbmc_S43_L002_R1_001.fastq.gz RNA-Seq 763.9 MB
U4_pbmc_ulcerative_colitis_4_pbmc_S44_L002_R1_001.fastq.gz RNA-Seq 507.1 MB
U4_rectum_ulcerative_4_rectum_S45_L002_R1_001.fastq.gz RNA-Seq 1.0 GB
U4_rectum_ulcerative_4_rectum_S46_L002_R1_001.fastq.gz RNA-Seq 517.8 MB
U4_rectum_ulcerative_4_rectum_S47_L002_R1_001.fastq.gz RNA-Seq 153.4 MB
U4_rectum_ulcerative_4_rectum_S48_L002_R1_001.fastq.gz RNA-Seq 970.3 MB
U5_pbmc_ulcerative_colitis_5_pbmc_S49_L002_R1_001.fastq.gz RNA-Seq 761.5 MB
U5_pbmc_ulcerative_colitis_5_pbmc_S50_L002_R1_001.fastq.gz RNA-Seq 464.0 MB
U5_pbmc_ulcerative_colitis_5_pbmc_S51_L002_R1_001.fastq.gz RNA-Seq 635.9 MB
U5_pbmc_ulcerative_colitis_5_pbmc_S52_L002_R1_001.fastq.gz RNA-Seq 521.4 MB
U5_rectum_ulcerative_colitis_rectum_S53_L002_R1_001.fastq.gz RNA-Seq 912.1 MB
U5_rectum_ulcerative_colitis_rectum_S54_L002_R1_001.fastq.gz RNA-Seq 319.5 MB
U5_rectum_ulcerative_colitis_rectum_S55_L002_R1_001.fastq.gz RNA-Seq 639.0 MB
U5_rectum_ulcerative_colitis_rectum_S56_L002_R1_001.fastq.gz RNA-Seq 611.9 MB

Potentially related datasets 1

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

Accession Source Title
GSE125527 GSE · GEO GEO ↗ Single-Cell Analyses Elucidate the Cellular and Molecular Landscape of Ulcerative Colitis

Analysis pipelines 1

Pipeline Assay Steps Dataset
GSE125527 RNA-seq Data Processing geo_data_processing RNA-seq 9 GSE125527
Funding 19 grants
Grant Funder
S10 OD026929 NIH HHS (United States)
P30 CA023100 NCI NIH HHS (United States)
P30 DK120515 NIDDK NIH HHS (United States)
R01 AI129973 NIAID NIH HHS (United States)
P01 AI132122 NIAID NIH HHS (United States)
P30 NS047101 NINDS NIH HHS (United States)
R37 AI067545 NIAID NIH HHS (United States)
U19 MH107367 NIMH NIH HHS (United States)
R01 AI123202 NIAID NIH HHS (United States)
T32 DK007202 NIDDK NIH HHS (United States)
R21 DK119724 NIDDK NIH HHS (United States)
R01 AI100880 NIAID NIH HHS (United States)
KL2 TR001444 NCATS NIH HHS (United States)
I01 BX003424 BLRD VA (United States)
Z01 AI000880 Intramural NIH HHS (United States)
R01 AI082850 NIAID NIH HHS (United States)
S10 OD018499 NIH HHS (United States)
K23 DK117058 NIDDK NIH HHS (United States)
K23 DK123406 NIDDK NIH HHS (United States)